LEPSCAN-a web server for searching latent periodicity in DNA sequences

被引：2

作者：

Shelenkov, Andrew ^{[1
]}

Korotkov, Eugene ^{[1
,2
]}

机构：

[1] Russian Acad Sci, Bioinformat Dept, Ctr Bioengn, Moscow, Russia

[2] Russian Acad Sci, Dept Appl Math, Moscow Engn Phys Inst, Moscow, Russia

来源：

BRIEFINGS IN BIOINFORMATICS | 2012年 / 13卷 / 02期

关键词：

sequence analysis; periodicity; DNA; in silico prediction; website review; NUMBER TANDEM REPEAT; VARIABLE-NUMBER; CLASSIFICATION; GENOMES; PLANT;

D O I：

10.1093/bib/bbr044

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

A web server for searching latent periodicity based on the method of modified profile analysis has been developed. This method allows searching latent periodicity in presence of insertions and deletions. During searching process, the periodicity classes are used which were found by us earlier for various groups of organisms. Period length belongs to the range 2-20 nt, not including the triplet periodicity. The results obtained are subjected to various filtration steps to ensure their statistical significance. Availability: The use of web server is free for non-commercial users. No registration is required. URL of the server is free for non-commercial users. No registration is required. URL of the server is http://victoria.biengi.ac.ru/lepscan.. Current software version is 1.06.

引用

页码：143 / 149

页数：7

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