The complete chloroplast genome of Lindera pulcherrima var. hemsleyana (Lauraceae)

被引:0
|
作者
Qian, Shao-Juan [1 ]
Zhang, Yong-Hong [1 ]
机构
[1] Yunnan Normal Univ, Sch Life Sci, Kunming, Yunnan, Peoples R China
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2020年 / 5卷 / 03期
基金
中国国家自然科学基金;
关键词
Lindera pulcherrimavar; hemsleyana; chloroplast genome; phylogenetic analysis; Lauraceae;
D O I
10.1080/23802359.2020.1810164
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Lindera pulcherrimavar.hemsleyanais an evergreen tree of the genusLinderawith important medicinal value. The complete chloroplast genome ofL. pulcherrimavar.hemsleyanais 152,710 bp in length, containing a LSC region of 93,751 bp, a SSC region of 18,813 bp, and a pair of inverted repeats (IRA and IRB) of 20,073 bp each. The genome encoded 128 genes, including 83 protein-coding genes, 8 ribosomal RNA genes, 36 transfer RNA genes, and one pseudogene (ycf1). Most of these genes occurred in a single copy, whereas 15 genes occurred in double copies, including all rRNA, 6 tRNA, and 5 protein-coding genes. The GC content of the whole genome, LSC, SSC, and IR regions is 39.2%, 38.0%, 33.9%, and 44.4%, respectively. A total of 90 SSRs were discovered, the numbers of mono-, di-, tri-, tetra-, penta-, and hexa-nucleotides SSRs were 66, 10, 4, 8, 1, and 1, respectively. Phylogenetic analysis of cp genomes from 24 species of Lauraceae revealed that cp genomes ofL. pulcherrimavar.hemsleyana,L. pulcherrimavar.attenuata, andL. pulcherrimaformed a monophyletic clade with 100% bootstrap value.
引用
收藏
页码:3267 / 3268
页数:2
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