NMR resonance assignments;
TALOS-N prediction;
Rice cyclophilin;
Lateral root development;
Protein chemical shift assignment;
D O I:
10.1007/s12104-018-9803-x
中图分类号:
Q6 [生物物理学];
学科分类号:
071011 ;
摘要:
Cyclophilins are enzymes that catalyze the isomerization of a prolyl-peptide bond and are found in both prokaryotes and eukaryotes. LRT2 (also known as OsCYP2) is a cyclophilin in rice (Oryza sativa), that has importance in lateral root development and stress tolerance. LRT2 is 172 amino acids long and has a molecular weight of 18.3 kDa. Here, we report the backbone and sidechain resonance assignments of H-1, C-13, N-15 in the LRT2 protein using several 2D and 3D heteronuclear NMR experiments at pH 6.7 and 298 K. Our chemical shift data analysis predicts a secondary structure like the cytosolic wheat cyclophilin TaCypA-1 with 87.7% sequence identity. These assignments will be useful for further analysis in the NMR studies for function and structure of this enzyme.
机构:
Rensselaer Polytech Inst, Dept Biol, Ctr Biotechnol & Interdisciplinary Studies, Troy, NY 12180 USARensselaer Polytech Inst, Dept Biol, Ctr Biotechnol & Interdisciplinary Studies, Troy, NY 12180 USA
Du, Zhenming
Liu, Yangzhong
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Univ Sci & Technol China, Dept Chem, Hefei 230026, Anhui, Peoples R ChinaRensselaer Polytech Inst, Dept Biol, Ctr Biotechnol & Interdisciplinary Studies, Troy, NY 12180 USA
Liu, Yangzhong
Zheng, Yuchuan
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机构:
Univ Sci & Technol China, Dept Chem, Hefei 230026, Anhui, Peoples R ChinaRensselaer Polytech Inst, Dept Biol, Ctr Biotechnol & Interdisciplinary Studies, Troy, NY 12180 USA
Zheng, Yuchuan
McCallum, Scott
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机构:
Rensselaer Polytech Inst, Dept Biol, Ctr Biotechnol & Interdisciplinary Studies, Troy, NY 12180 USARensselaer Polytech Inst, Dept Biol, Ctr Biotechnol & Interdisciplinary Studies, Troy, NY 12180 USA
McCallum, Scott
Dansereau, John
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机构:
New York State Dept Hlth, Wadsworth Ctr, Albany, NY 12208 USARensselaer Polytech Inst, Dept Biol, Ctr Biotechnol & Interdisciplinary Studies, Troy, NY 12180 USA
Dansereau, John
Derbyshire, Victoria
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New York State Dept Hlth, Wadsworth Ctr, Albany, NY 12208 USARensselaer Polytech Inst, Dept Biol, Ctr Biotechnol & Interdisciplinary Studies, Troy, NY 12180 USA
Derbyshire, Victoria
Belfort, Marlene
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New York State Dept Hlth, Wadsworth Ctr, Albany, NY 12208 USARensselaer Polytech Inst, Dept Biol, Ctr Biotechnol & Interdisciplinary Studies, Troy, NY 12180 USA
Belfort, Marlene
Belfort, Georges
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机构:
Rensselaer Polytech Inst, Dept Biol, Ctr Biotechnol & Interdisciplinary Studies, Troy, NY 12180 USARensselaer Polytech Inst, Dept Biol, Ctr Biotechnol & Interdisciplinary Studies, Troy, NY 12180 USA
Belfort, Georges
Van Roey, Patrick
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New York State Dept Hlth, Wadsworth Ctr, Albany, NY 12208 USARensselaer Polytech Inst, Dept Biol, Ctr Biotechnol & Interdisciplinary Studies, Troy, NY 12180 USA
Van Roey, Patrick
Wang, Chunyu
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Rensselaer Polytech Inst, Dept Biol, Ctr Biotechnol & Interdisciplinary Studies, Troy, NY 12180 USARensselaer Polytech Inst, Dept Biol, Ctr Biotechnol & Interdisciplinary Studies, Troy, NY 12180 USA
机构:
Tokyo Metropolitan Univ, Grad Sch Sci & Technol, Hachioji, Tokyo 1920397, JapanTokyo Metropolitan Univ, Grad Sch Sci & Technol, Hachioji, Tokyo 1920397, Japan
Kawasaki, Kumiko
Yoneyama, Momoko
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机构:
Nara Inst Sci & Technol, Grad Sch Biol Sci, Nara 6300192, JapanTokyo Metropolitan Univ, Grad Sch Sci & Technol, Hachioji, Tokyo 1920397, Japan
Yoneyama, Momoko
Murata-Kamiya, Naoko
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机构:
Univ Tokyo, Grad Sch Med, Bunkyo Ku, Tokyo 1130033, JapanTokyo Metropolitan Univ, Grad Sch Sci & Technol, Hachioji, Tokyo 1920397, Japan
Murata-Kamiya, Naoko
Harashima, Hideyoshi
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机构:
Hokkaido Univ, Fac Pharmaceut Sci, Kita Ku, Sapporo, Hokkaido 0600812, JapanTokyo Metropolitan Univ, Grad Sch Sci & Technol, Hachioji, Tokyo 1920397, Japan
Harashima, Hideyoshi
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Kojima, Chojiro
Ito, Yutaka
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机构:
Tokyo Metropolitan Univ, Grad Sch Sci & Technol, Hachioji, Tokyo 1920397, JapanTokyo Metropolitan Univ, Grad Sch Sci & Technol, Hachioji, Tokyo 1920397, Japan
Ito, Yutaka
Kamiya, Hiroyuki
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机构:
Ehime Univ, Grad Sch Sci & Engn, Matsuyama, Ehime 7908577, JapanTokyo Metropolitan Univ, Grad Sch Sci & Technol, Hachioji, Tokyo 1920397, Japan
Kamiya, Hiroyuki
Mishima, Masaki
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机构:
Tokyo Metropolitan Univ, Grad Sch Sci & Technol, Hachioji, Tokyo 1920397, JapanTokyo Metropolitan Univ, Grad Sch Sci & Technol, Hachioji, Tokyo 1920397, Japan