Modeling biological tissue growth: Discrete to continuum representations

被引:15
|
作者
Hywood, Jack D. [1 ]
Hackett-Jones, Emily J. [1 ]
Landman, Kerry A. [1 ]
机构
[1] Univ Melbourne, Dept Math & Stat, Melbourne, Vic 3010, Australia
来源
PHYSICAL REVIEW E | 2013年 / 88卷 / 03期
基金
澳大利亚研究理事会;
关键词
EXCLUSION PROCESSES; CELL-MIGRATION; DOMAIN; DIFFUSION; MECHANISM;
D O I
10.1103/PhysRevE.88.032704
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
There is much interest in building deterministic continuum models from discrete agent-based models governed by local stochastic rules where an agent represents a biological cell. In developmental biology, cells are able to move and undergo cell division on and within growing tissues. A growing tissue is itself made up of cells which undergo cell division, thereby providing a significant transport mechanism for other cells within it. We develop a discrete agent-based model where domain agents represent tissue cells. Each agent has the ability to undergo a proliferation event whereby an additional domain agent is incorporated into the lattice. If a probability distribution describes the waiting times between proliferation events for an individual agent, then the total length of the domain is a random variable. The average behavior of these stochastically proliferating agents defining the growing lattice is determined in terms of a Fokker-Planck equation, with an advection and diffusion term. The diffusion term differs from the one obtained Landman and Binder [J. Theor. Biol. 259, 541 (2009)] when the rate of growth of the domain is specified, but the choice of agents is random. This discrepancy is reconciled by determining a discrete-time master equation for this process and an associated asymmetric nonexclusion random walk, together with consideration of synchronous and asynchronous updating schemes. All theoretical results are confirmed with numerical simulations. This study furthers our understanding of the relationship between agent-based rules, their implementation, and their associated partial differential equations. Since tissue growth is a significant cellular transport mechanism during embryonic growth, it is important to use the correct partial differential equation description when combining with other cellular functions.
引用
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页数:9
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