Codominant grasses differ in gene expression under experimental climate extremes in native tallgrass prairie

被引:6
|
作者
Hoffman, Ava M. [1 ,2 ]
Avolio, Meghan L. [3 ]
Knapp, Alan K. [1 ,2 ]
Smith, Melinda D. [1 ,2 ]
机构
[1] Colorado State Univ, Dept Biol, Ft Collins, CO 80523 USA
[2] Colorado State Univ, Grad Degree Program Ecol, Ft Collins, CO 80523 USA
[3] Johns Hopkins Univ, Dept Earth & Planetary Sci, Baltimore, MD 21218 USA
来源
PEERJ | 2018年 / 6卷
基金
美国国家科学基金会;
关键词
Andropogon gerardii; Sorghastrum nutans; Microarray; Drought; Heat wave; C4; grass; Dominant species; E3 UBIQUITIN LIGASE; PHYSIOLOGICAL-RESPONSES; ANDROPOGON-GERARDII; DROUGHT STRESS; TRANSCRIPTION FACTORS; ECOLOGICAL GENOMICS; SORGHASTRUM-NUTANS; PANICUM-VIRGATUM; PLANT; ECOSYSTEM;
D O I
10.7717/peerj.4394
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Extremes in climate, such as heat waves and drought, are expected to become more frequent and intense with forecasted climate change. Plant species will almost certainly differ in their responses to these stressors. We experimentally imposed a heat wave and drought in the tallgrass prairie ecosystem near Manhattan, Kansas, USA to assess transcriptional responses of two ecologically important C-4 grass species, Andropogon gerardii and Sorghastrum nutans. Based on previous research, we expected that S. nutans would regulate more genes, particularly those related to stress response, under high heat and drought. Across all treatments, S. nutans showed greater expression of negative regulatory and catabolism genes while A. gerardii upregulated cellular and protein metabolism. As predicted, S. nutans showed greater sensitivity to water stress, particularly with downregulation of non-coding RNAs and upregulation of water stress and catabolism genes. A. gerardii was less sensitive to drought, although A. gerardii tended to respond with upregulation in response to drought versus S. nutans which downregulated more genes under drier conditions. Surprisingly, A. gerardii only showed minimal gene expression response to increased temperature, while S. nutans showed no response. Gene functional annotation suggested that these two species may respond to stress via different mechanisms. Specifically, A. gerardii tends to maintain molecular function while S. nutans prioritizes avoidance. Sorghastrum nutans may strategize abscisic acid response and catabolism to respond rapidly to stress. These results have important implications for success of these two important grass species under a more variable and extreme climate forecast for the future.
引用
收藏
页数:23
相关论文
共 50 条
  • [41] A hidden Markov model-based approach for identifying timing differences in gene expression under different experimental factors
    Yoneya, Takashi
    Mamitsuka, Hiroshi
    BIOINFORMATICS, 2007, 23 (07) : 842 - 849
  • [42] Reproducible chemical-induced changes in gene expression profiles in human hepatoma HepaRG cells under various experimental conditions
    Lambert, Carine B.
    Spire, Catherine
    Renaud, Marie-Pierre
    Claude, Nancy
    Guillouzo, Andre
    TOXICOLOGY IN VITRO, 2009, 23 (03) : 466 - 475
  • [43] Selection of internal reference gene for quantitative real-time PCR analysis of gene expression in largemouth bass (Micropterus salmoides) under different experimental conditions
    Qian, Jing
    Zhang, Junying
    Mei, Yajie
    Shi, Mingyan
    Wang, Fan
    AQUACULTURE RESEARCH, 2022, 53 (18) : 6562 - 6573
  • [44] Selection and Validation of Optimal RT-qPCR Reference Genes for the Normalization of Gene Expression under Different Experimental Conditions in Lindera megaphylla
    Liu, Hongli
    Liu, Jing
    Chen, Peng
    Zhang, Xin
    Wang, Ke
    Lu, Jiuxing
    Li, Yonghua
    PLANTS-BASEL, 2023, 12 (11):
  • [45] Validation of Reference Genes for RT-qPCR Studies of Gene Expression in Preharvest and Postharvest Longan Fruits under Different Experimental Conditions
    Wu, Jianyang
    Zhang, Hongna
    Liu, Liqin
    Li, Weicai
    Wei, Yongzan
    Shi, Shengyou
    FRONTIERS IN PLANT SCIENCE, 2016, 7
  • [46] Cplx2 Gene Expression Following Semax or PGP Administration under Conditions of Two Experimental Models of Rat-Brain Ischemia
    Stavchansky, V. V.
    Kurichenkova, E. O.
    Dmitrieva, V. G.
    Myasoedov, N. F.
    Limborska, S. A.
    Dergunova, L. V.
    MOLECULAR GENETICS MICROBIOLOGY AND VIROLOGY, 2016, 31 (04) : 214 - 219
  • [47] Expression of p65 gene in experimental colon cancer under the influence of 5-fluorouracil given alone and in combination with hormonal modulation
    Melen-Mucha, G
    Balcerczak, E
    Mucha, S
    Panczyk, M
    Lipa, S
    Mirowski, M
    NEOPLASMA, 2004, 51 (04) : 319 - 324
  • [48] Cplx2 gene expression following semax or PGP administration under conditions of two experimental models of rat-brain ischemia
    V. V. Stavchansky
    E. O. Kurichenkova
    V. G. Dmitrieva
    N. F. Myasoedov
    S. A. Limborska
    L. V. Dergunova
    Molecular Genetics, Microbiology and Virology, 2016, 31 : 214 - 219
  • [49] Selection of Suitable Reference Genes for RT-qPCR Gene Expression Analysis in Siberian Wild Rye (Elymus sibiricus) under Different Experimental Conditions
    Zhang, Junchao
    Xie, Wengang
    Yu, Xinxuan
    Zhang, Zongyu
    Zhao, Yongqiang
    Wang, Na
    Wang, Yanrong
    GENES, 2019, 10 (06)
  • [50] Selection and validation of reference genes for measuring gene expression in Toona ciliata under different experimental conditions by quantitative real-time PCR analysis
    Song, Huiyun
    Mao, Wenmai
    Duan, Zhihao
    Que, Qingmin
    Zhou, Wei
    Chen, Xiaoyang
    Li, Pei
    BMC PLANT BIOLOGY, 2020, 20 (01)