A COMPARATIVE STUDY ON INTERMOLECULAR HYDROGEN BOND INTERACTIONS IN MOLECULAR DIMERS USING DIFFERENT LEVELS OF COMPUTATIONAL METHODS

被引:9
|
作者
Wang, Cuihong [1 ,2 ,3 ]
Zhang, Ruiqin [2 ]
Lin, Zijing [1 ]
机构
[1] Univ Sci & Technol China, Dept Phys, Hefei 230026, Peoples R China
[2] City Univ Hong Kong, Dept Phys & Mat Sci, Hong Kong, Hong Kong, Peoples R China
[3] USTC CityU Joint Adv Res Ctr, Suzhou 215123, Peoples R China
来源
基金
美国国家科学基金会;
关键词
Intermolecular hydrogen bonds; Hartree-Fock method; density functional theory; MP2; DFTB-D; DENSITY-FUNCTIONAL-THEORY; DNA-BASE PAIRS; VAN-DER-WAALS; INTERACTION ENERGIES; PERTURBATION-THEORY; AB-INITIO; BASIS-SET; ACID; COMPLEXES; SIMULATIONS;
D O I
10.1142/S0219633612500836
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Hydrogen bond interactions in biological systems are important scientific issues but are challenging for their theoretical determinations at quantum-mechanical level of theory. Due to the different approximations, the available theoretical approaches often predict diverse hydrogen bond lengths and strengths. In this work, we evaluated the reliabilities of a number of widely used theoretical approaches including HF, SVWN, BLYP, PW91, B3LYP, BH and HLYP, B97D, M06L, MP2, and DFTB-D in studying hydrogen bonding, by calculating the hydrogen bond lengths and binding energies of 23 dimers formed by HCOOH, NH3 and Glycine. We also compared the effects of STO-3G, 6-31+G**, 6-311++G** and 6-311++G(2df,2p) basis sets on the results. Our result shows that, M06L, B3LYP and BHandHLYP methods can predict accurate dimer structures with a moderate basis set. Moreover, DFTB-D also gives reasonably reliable results with high efficiency and satisfactory precision, being a good choice for studying complex structures which contain hydrogen bonds.
引用
收藏
页码:1237 / 1259
页数:23
相关论文
共 50 条
  • [21] Computational study of 3-thiophene acetic acid: Molecular docking, electronic and intermolecular interactions investigations
    Ben Issa, Takoua
    Sagaama, Abir
    Issaoui, Noureddine
    COMPUTATIONAL BIOLOGY AND CHEMISTRY, 2020, 86
  • [22] Computational study of intermolecular interactions between L-cysteine and 2-mercaptopyrimidine compounds using DFT, QTAIM, and NBO methods
    Morkan, Izzet
    Morkan, Ayse
    Yazici, Hasan
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2015, 250
  • [23] Specific Intermolecular Interactions in the Supramolecular Structure of 5-Hydroxy-6-Methyluracil: A DFT Study of the Hydrogen-bonded Dimers
    Shayakhmetova, Regina Kh.
    Khamitov, Edward M.
    Mustafin, Akhat G.
    Ivanov, Sergey P.
    Khursan, Sergey L.
    JOURNAL OF THE CHINESE CHEMICAL SOCIETY, 2017, 64 (02) : 143 - 151
  • [24] A Comparative Study of Different Deblurring Methods Using Filters
    Srimani, P. K.
    Kavitha, S.
    2ND INTERNATIONAL CONFERENCE ON METHODS AND MODELS IN SCIENCE AND TECHNOLOGY (ICM2ST-11), 2011, 1414
  • [25] A computational study of dimers and trimers of nitrosyl hydride: Blue shift of NH bonds that are involved in H-bond and orthogonal interactions
    Solimannejad, Mohammad
    Massahi, Shokofeh
    Alkorta, Ibon
    CHEMICAL PHYSICS, 2009, 362 (1-2) : 1 - 7
  • [26] A Comparative Study on the Effect of Different Methods of Recycling Orthodontic Brackets on Shear Bond Strength
    Khanal, Purna Prasad
    Shrestha, Basanta Kumar
    Yadav, Rajiv
    Prasad Gupta, Sanjay
    INTERNATIONAL JOURNAL OF DENTISTRY, 2021, 2021
  • [27] Comparative Study of Different Methods for the Preparation of CoxOy/C for the Electrosynthesis of Hydrogen Peroxide
    Assumpcao, M. H. M. T.
    Rascio, D. C.
    Ladeia, J. P. B.
    De Souza, R. F. B.
    Neto, E. Teixeira
    Calegaro, M. L.
    Oliveira, R. T. S.
    Gaubeur, I.
    Lanza, M. R. V.
    Santos, M. C.
    INTERNATIONAL JOURNAL OF ELECTROCHEMICAL SCIENCE, 2011, 6 (05): : 1586 - 1596
  • [28] Probing Weak Intermolecular Interactions by Using the Invariom Approach: A Comparative Study of s-Tetrazine
    Nelyubina, Yulia V.
    Korlyukov, Alexander A.
    Lyssenko, Konstantin A.
    CHEMISTRY-A EUROPEAN JOURNAL, 2014, 20 (23) : 6978 - 6984
  • [29] Comparative Study on the Outgassing Rate of Materials Using Different Methods
    Luo, Yan
    Wu, Xiaobin
    Wang, Kuibo
    Wang, Yu
    MAPAN-JOURNAL OF METROLOGY SOCIETY OF INDIA, 2016, 31 (01): : 61 - 68
  • [30] A Comparative Study of Urinary Proteins Using Different Precipitation Methods
    Arunambiga, Subramaniam
    Dave, Gaurav S.
    Joshi, Jaydip
    Goswami, Nirav
    Jogani, Pratibha
    Raval, Ishani
    BIOSCIENCE BIOTECHNOLOGY RESEARCH COMMUNICATIONS, 2020, 13 (03): : 1099 - 1103