RS-WebPredictor: a server for predicting CYP-mediated sites of metabolism on drug-like molecules

被引:49
|
作者
Zaretzki, Jed [1 ,2 ]
Bergeron, Charles [3 ]
Huang, Tao-wei [2 ]
Rydberg, Patrik [4 ]
Swamidass, S. Joshua [1 ]
Breneman, Curt M. [2 ]
机构
[1] Washington Univ, Sch Med, Dept Pathol & Immunol, St Louis, MO 63130 USA
[2] Rensselaer Polytech Inst, Dept Chem & Chem Biol, Troy, NY 12180 USA
[3] Albany Coll Pharm & Hlth Sci, Dept Basic & Social Sci, Albany, NY 12208 USA
[4] Univ Copenhagen, Dept Drug Design & Pharmacol, DK-2100 Copenhagen, Denmark
关键词
P450;
D O I
10.1093/bioinformatics/bts705
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Regioselectivity-WebPredictor (RS-WebPredictor) is a server that predicts isozyme-specific cytochrome P450(CYP)-mediated sites of metabolism(SOMs) on drug-like molecules. Predictions may be made for the promiscuous 2C9, 2D6 and 3A4 CYP isozymes, as well as CYPs 1A2, 2A6, 2B6, 2C8, 2C19 and 2E1. RS-WebPredictor is the first freely accessible server that predicts the regioselectivity of the last six isozymes. Server execution time is fast, taking on average 2s to encode a submitted molecule and 1s to apply a given model, allowing for high-throughput use in lead optimization projects.
引用
收藏
页码:497 / 498
页数:2
相关论文
共 40 条
  • [1] A model for predicting likely sites of CYP3A4-mediated metabolism on drug-like molecules
    Singh, SB
    Shen, LQ
    Walker, MJ
    Sheridan, RP
    JOURNAL OF MEDICINAL CHEMISTRY, 2003, 46 (08) : 1330 - 1336
  • [2] Predicting CYP-mediated metabolism, drug-drug interaction, and toxicity
    Moitessier, Nicolas
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2019, 257
  • [3] XenoSite: Accurately Predicting CYP-Mediated Sites of Metabolism with Neural Networks
    Zaretzki, Jed
    Matlock, Matthew
    Swamidass, S. Joshua
    JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2013, 53 (12) : 3373 - 3383
  • [4] SOMP: web server for in silico prediction of sites of metabolism for drug-like compounds
    Rudik, Anastasia
    Dmitriev, Alexander
    Lagunin, Alexey
    Filimonov, Dmitry
    Poroikov, Vladimir
    BIOINFORMATICS, 2015, 31 (12) : 2046 - 2048
  • [5] The complexities inherent in attempts to decrease drug clearance by blocking sites of CYP-mediated metabolism
    Fisher, MB
    Henne, KR
    Boer, J
    CURRENT OPINION IN DRUG DISCOVERY & DEVELOPMENT, 2006, 9 (01) : 101 - 109
  • [6] CYP-mediated drug metabolism in the brain impacts drug response
    McMillan, Douglas M.
    Tyndale, Rachel F.
    PHARMACOLOGY & THERAPEUTICS, 2018, 184 : 189 - 200
  • [7] Advances in predicting CYP-mediated drug interactions in the drug discovery setting
    Wahlstrom, Jan L.
    Rock, Dan A.
    Slatter, J. Greg
    Wienkers, Larry C.
    EXPERT OPINION ON DRUG DISCOVERY, 2006, 1 (07) : 677 - 691
  • [8] Predicting the Crystallization Propensity of Drug-Like Molecules
    Hancock, Bruno C.
    JOURNAL OF PHARMACEUTICAL SCIENCES, 2017, 106 (01) : 28 - 30
  • [9] DrugMint: a webserver for predicting and designing of drug-like molecules
    Dhanda, Sandeep Kumar
    Singla, Deepak
    Mondal, Alok K.
    Raghava, Gajendra P. S.
    BIOLOGY DIRECT, 2013, 8
  • [10] Brain CYP-mediated drug metabolism contributes in vivo to pharmacological responses
    Tyndale, Rachel F.
    Khokhar, Jibran
    Mann, Amandeep
    Miksys, Sharon
    DRUG METABOLISM REVIEWS, 2011, 43 : 22 - 23