Diastereomer Configurations from Joint Experimental-Computational Analysis

被引:9
|
作者
Aliev, Abil E. [1 ]
Mia, Zakirin A. [1 ]
Busson, Mathilde J. M. [1 ]
Fitzmaurice, Richard J. [1 ]
Caddick, Stephen [1 ]
机构
[1] UCL, Dept Chem, London WC1H 0AJ, England
来源
JOURNAL OF ORGANIC CHEMISTRY | 2012年 / 77卷 / 14期
关键词
MOLECULAR-DYNAMICS SIMULATIONS; MAIN-GROUP THERMOCHEMISTRY; BORN SOLVATION MODEL; NMR CHEMICAL-SHIFTS; CONFORMATIONAL-ANALYSIS; FORCE-FIELDS; RELATIVE CONFIGURATION; DENSITY FUNCTIONALS; ACCURACY; ENERGIES;
D O I
10.1021/jo301119h
中图分类号
O62 [有机化学];
学科分类号
070303 ; 081704 ;
摘要
The potential of the approach combining nuclear magnetic resonance (NMR) spectroscopy, relaxed grid search (RGS), molecular dynamics (MD) simulations, and quantum mechanical (QM) calculations for the determination of diastereomer configurations is demonstrated using four diastereomers of a trisubstituted epoxide. Since the change in configuration of the chiral center is expected to change the distribution of conformer populations (including those of side-chain rotamers), changes in NMR parameters [chemical shifts, J couplings, and nuclear Overhauser effects (NOEs)] are expected. The method therefore relies on (1) identification of possible conformations in each diastereomer using relaxed grid search analysis and MD simulations; (2) geometry optimizations of conformers selected from step (1), followed by calculations of their relative energies (populations) using QM methods; (3) calculations of averaged NMR parameters using QM methods; (4) matching calculated and experimental values of NMR parameters of diastereomers. The diastereomer configurations are considered resolved, if three NMR parameters different in nature, chemical shifts, J couplings, and NOEs, are in agreement. A further advantage of this method is that full structural and dynamics characterization of each of the diastereomers is achieved based on the joint analysis of experimental and computational data.
引用
收藏
页码:6290 / 6295
页数:6
相关论文
共 50 条
  • [41] An Integrated Experimental-Computational Study of Vocal Fold Vibration in Type I Thyroplasty
    Avhad, Amit
    Wilson, Azure
    Sayce, Lea
    Li, Zheng
    Rousseau, Bernard
    Doyle, James F.
    Luo, Haoxiang
    JOURNAL OF BIOMECHANICAL ENGINEERING-TRANSACTIONS OF THE ASME, 2024, 146 (04):
  • [42] Synthesis and Experimental-Computational Characterization of a Copper/Vanadium Compound with Potential Anticancer Activity
    Martinez-Valencia, Beatriz
    Corona-Motolinia, Nidia D.
    Sanchez-Lara, Eduardo
    Sanchez-Gaytan, Brenda L.
    Cerro-Lopez, Monica
    Mendoza, Angel
    Eugenia Castro, Maria
    Melendez-Bustamante, Francisco J.
    Gonzalez-Vergara, Enrique
    CRYSTALS, 2020, 10 (06) : 1 - 20
  • [43] Determining the model parameters of nonlinear deformation of isotropic and composite materials from the results of an experimental-computational analysis of impulsively loaded circular plates
    N. A. Abrosimov
    N. A. Kulikova
    Journal of Applied Mechanics and Technical Physics, 2011, 52 : 132 - 140
  • [44] Determining the model parameters of nonlinear deformation of isotropic and composite materials from the results of an experimental-computational analysis of impulsively loaded circular plates
    Abrosimov, N. A.
    Kulikova, N. A.
    JOURNAL OF APPLIED MECHANICS AND TECHNICAL PHYSICS, 2011, 52 (01) : 132 - 140
  • [45] Studying metabolic flux adaptations in cancer through integrated experimental-computational approaches
    Lagziel, Shoval
    Lee, Won Dong
    Shlomi, Tomer
    BMC BIOLOGY, 2019, 17 (1)
  • [46] Development of a balanced experimental-computational approach to understanding the mechanics of proximal femur fractures
    Helgason, B.
    Gilchrist, S.
    Ariza, O.
    Chak, J. D.
    Zheng, G.
    Widmer, R. P.
    Ferguson, S. J.
    Guy, P.
    Cripton, P. A.
    MEDICAL ENGINEERING & PHYSICS, 2014, 36 (06) : 793 - 799
  • [47] Elasticity Size Effects in ZnO Nanowires-A Combined Experimental-Computational Approach
    Agrawal, Ravi
    Peng, Bei
    Gdoutos, Eleftherios E.
    Espinosa, Horacio D.
    NANO LETTERS, 2008, 8 (11) : 3668 - 3674
  • [48] Mitochondrial respiration and ROS emission during β-oxidation in the heart: An experimental-computational study
    Cortassa, Sonia
    Sollott, Steven J.
    Aon, Miguel A.
    PLOS COMPUTATIONAL BIOLOGY, 2017, 13 (06)
  • [49] Experimental-computational methods for determination of the stress-strain state of structural components
    Razumovskii, I. A.
    Chernyatin, A. S.
    Fomin, A. V.
    INORGANIC MATERIALS, 2014, 50 (15) : 1528 - 1536
  • [50] Experimental-computational methods for determination of the stress-strain state of structural components
    I. A. Razumovskii
    A. S. Chernyatin
    A. V. Fomin
    Inorganic Materials, 2014, 50 : 1528 - 1536