Change-point models to estimate the limit of detection

被引:4
|
作者
May, Ryan C. [1 ]
Chu, Haitao [2 ]
Ibrahim, Joseph G. [3 ]
Hudgens, Michael G. [3 ]
Lees, Abigail C. [4 ]
Margolis, David M. [5 ]
机构
[1] EMMES Corp, Rockville, MD 20850 USA
[2] Univ Minnesota, Sch Publ Hlth, Div Biostat, Minneapolis, MN 55455 USA
[3] Univ N Carolina, Dept Biostat, Chapel Hill, NC 27599 USA
[4] Univ N Carolina, Dept Med, Div Infect Dis, Chapel Hill, NC 27599 USA
[5] Univ N Carolina, Dept Med Epidemiol Microbiol & Immunol, Chapel Hill, NC 27599 USA
基金
美国国家卫生研究院;
关键词
change point; limit of detection; linear calibration curve; two-stage maximum likelihood; QUANTITATION; RNA; ASSAYS; PCR;
D O I
10.1002/sim.5872
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
In many biological and environmental studies, measured data is subject to a limit of detection. The limit of detection is generally defined as the lowest concentration of analyte that can be differentiated from a blank sample with some certainty. Data falling below the limit of detection is left censored, falling below a level that is easily quantified by a measuring device. A great deal of interest lies in estimating the limit of detection for a particular measurement device. In this paper, we propose a change-point model to estimate the limit of detection by using data from an experiment with known analyte concentrations. Estimation of the limit of detection proceeds by a two-stage maximum likelihood method. Extensions are considered that allow for censored measurements and data from multiple experiments. A simulation study is conducted demonstrating that in some settings the change-point model provides less biased estimates of the limit of detection than conventional methods. The proposed method is then applied to data from an HIV pilot study. Copyright (c) 2013 John Wiley & Sons, Ltd.
引用
收藏
页码:4995 / 5007
页数:13
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