Biomolecular Network-Based Synergistic Drug Combination Discovery

被引:38
|
作者
Li, Xiangyi [1 ,2 ]
Qin, Guangrong [2 ]
Yang, Qingmin [1 ,2 ]
Chen, Lanming [1 ]
Xie, Lu [2 ]
机构
[1] Shanghai Ocean Univ, China Minist Agr, Coll Food Sci & Technol, Key Lab Qual & Safety Risk Assessment Aquat Prod, 999 Hu Cheng Huan Rd, Shanghai 201306, Peoples R China
[2] Shanghai Acad Sci & Technol, Shanghai Ctr Bioinformat Technol, 1278 Keyuan Rd, Shanghai 201203, Peoples R China
基金
中国国家自然科学基金;
关键词
GENE-EXPRESSION; MULTIDRUG-RESISTANCE; R PACKAGE; CANCER; DATABASE; PROTEINS; PREDICT; TRANSPORTERS; DESIGN; CELLS;
D O I
10.1155/2016/8518945
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Drug combination is a powerful and promising approach for complex disease therapy such as cancer and cardiovascular disease. However, the number of synergistic drug combinations approved by the Food and Drug Administration is very small. To bridge the gap between urgent need and low yield, researchers have constructed various models to identify synergistic drug combinations. Among thesemodels, biomolecular network-basedmodel is outstanding because of its ability to reflect and illustrate the relationships among drugs, disease-related genes, therapeutic targets, and disease-specific signaling pathways as a system. In this review, we analyzed and classified models for synergistic drug combination prediction in recent decade according to their respective algorithms. Besides, we collected useful resources including databases and analysis tools for synergistic drug combination prediction. It should provide a quick resource for computational biologists who work with network medicine or synergistic drug combination designing.
引用
收藏
页数:11
相关论文
共 50 条
  • [31] Network-based Drug Discovery, Anti-cancer Molecular Targets and Therapeutic use of Phytochemicals
    Koiri, Raj Kumar
    Mehrotra, Aditi
    [J]. ANTI-CANCER AGENTS IN MEDICINAL CHEMISTRY, 2018, 18 (13) : 1794 - 1795
  • [32] Network-based data integration for modifier gene and drug target discovery in Huntington's disease
    Neri, C.
    Bicep, C.
    Mesrob, L.
    [J]. EUROPEAN NEUROPSYCHOPHARMACOLOGY, 2010, 20 : S185 - S186
  • [33] Neural network-based QSAR and insecticide discovery: spinetoram
    Thomas C. Sparks
    Gary D. Crouse
    James E. Dripps
    Peter Anzeveno
    Jacek Martynow
    Carl V. DeAmicis
    James Gifford
    [J]. Journal of Computer-Aided Molecular Design, 2008, 22 : 393 - 401
  • [34] Neural network-based QSAR and insecticide discovery: spinetoram
    Sparks, Thomas C.
    Crouse, Gary D.
    Dripps, James E.
    Anzeveno, Peter
    Martynow, Jacek
    DeAmicis, Carl V.
    Gifford, James
    [J]. JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 2008, 22 (6-7) : 393 - 401
  • [35] Cocrystals of Praziquantel: Discovery by Network-Based Link Prediction
    Devogelaer, Jan-Joris
    Charpentier, Maxime D.
    Tijink, Arnoud
    Dupray, Valerie
    Coquerel, Gerard
    Johnston, Karen
    Meekes, Hugo
    Tinnemans, Paul
    Vlieg, Elias
    ter Horst, Joop H.
    de Gelder, Rene
    [J]. CRYSTAL GROWTH & DESIGN, 2021, 21 (06) : 3428 - 3437
  • [36] Social Network-Based Framework for Web Services Discovery
    Fallatah, Hiba
    Bentahar, Jamal
    Asl, Ehsan Khosrowshahi
    [J]. 2014 INTERNATIONAL CONFERENCE ON FUTURE INTERNET OF THINGS AND CLOUD (FICLOUD), 2014, : 159 - 166
  • [37] NetSig: Network-based discovery from cancer genomes
    Horn H.
    Lawrence M.S.
    Chouinard C.R.
    Shrestha Y.
    Hu J.X.
    Worstell E.
    Shea E.
    Ilic N.
    Kim E.
    Kamburov A.
    Kashani A.
    Hahn W.C.
    Campbell J.D.
    Boehm J.S.
    Getz G.
    Lage K.
    [J]. Nature Methods, 2018, 15 (1) : 61 - 66
  • [38] NetEPD: A Network-Based Essential Protein Discovery Platform
    Jiashuai Zhang
    Wenkai Li
    Min Zeng
    Xiangmao Meng
    Lukasz Kurgan
    Fang-Xiang Wu
    Min Li
    [J]. Tsinghua Science and Technology, 2020, 25 (04) : 542 - 552
  • [39] NetEPD: A Network-Based Essential Protein Discovery Platform
    Zhang, Jiashuai
    Li, Wenkai
    Zeng, Min
    Meng, Xiangmao
    Kurgan, Lukasz
    Wu, Fang-Xiang
    Li, Min
    [J]. TSINGHUA SCIENCE AND TECHNOLOGY, 2020, 25 (04) : 542 - 552
  • [40] MS network-based screening for new antibiotics discovery
    Nobuhiro Koyama
    Hiroshi Tomoda
    [J]. The Journal of Antibiotics, 2019, 72 : 54 - 56