Metadata Stewardship in Nanosafety Research: Community-Driven Organisation of Metadata Schemas to Support FAIR Nanoscience Data

被引:39
|
作者
Papadiamantis, Anastasios G. [1 ,2 ]
Klaessig, Frederick C. [3 ]
Exner, Thomas E. [4 ]
Hofer, Sabine [5 ]
Hofstaetter, Norbert [5 ]
Himly, Martin [5 ]
Williams, Marc A. [6 ]
Doganis, Philip [7 ]
Hoover, Mark D. [8 ]
Afantitis, Antreas [2 ]
Melagraki, Georgia [2 ]
Nolan, Tracy S. [9 ]
Rumble, John [10 ,11 ]
Maier, Dieter [12 ]
Lynch, Iseult [1 ]
机构
[1] Univ Birmingham, Sch Geog Earth & Environm Sci, Birmingham B15 2TT, W Midlands, England
[2] Novamechanics Ltd, CY-1065 Nicosia, Cyprus
[3] Penn Bio Nano Syst, Doylestown, PA 18901 USA
[4] Edelweiss Connect, CH-4057 Basel, Switzerland
[5] Paris Lodron Univ Salzburg, Dept Biosci, A-5020 Salzburg, Austria
[6] US Army Publ Hlth Ctr APHC, Aberdeen Proving Ground South, Aberdeen, MD 21010 USA
[7] Natl Tech Univ Athens, Sch Chem Engn, Athens 15780, Greece
[8] Mark D Hoover LLC, Morgantown, WV 26505 USA
[9] Univ Arkansas Med Sci, Dept Biomed Informat, Little Rock, AR 72205 USA
[10] R&R Data Serv, Gaithersburg, MD 20877 USA
[11] CODATA VAMAS Working Grp Nanomat, F-75016 Paris, France
[12] Biomax Informat AG, D-82152 Planegg, Germany
基金
欧盟地平线“2020”; 美国国家卫生研究院;
关键词
nanosafety; (meta)data; data curation; data management roles; data shepherd; FAIR scientific principles; DECISION-MAKING FRAMEWORK; IN-VITRO; PARTICLE-SIZE; DISSOLUTION RATES; NANOMATERIAL DATA; RISK-ASSESSMENT; HUMAN LUNG; NANOPARTICLES; TOXICITY; TRANSFORMATIONS;
D O I
10.3390/nano10102033
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The emergence of nanoinformatics as a key component of nanotechnology and nanosafety assessment for the prediction of engineered nanomaterials (NMs) properties, interactions, and hazards, and for grouping and read-across to reduce reliance on animal testing, has put the spotlight firmly on the need for access to high-quality, curated datasets. To date, the focus has been around what constitutes data quality and completeness, on the development of minimum reporting standards, and on the FAIR (findable, accessible, interoperable, and reusable) data principles. However, moving from the theoretical realm to practical implementation requires human intervention, which will be facilitated by the definition of clear roles and responsibilities across the complete data lifecycle and a deeper appreciation of what metadata is, and how to capture and index it. Here, we demonstrate, using specific worked case studies, how to organise the nano-community efforts to define metadata schemas, by organising the data management cycle as a joint effort of all players (data creators, analysts, curators, managers, and customers) supervised by the newly defined role of data shepherd. We propose that once researchers understand their tasks and responsibilities, they will naturally apply the available tools. Two case studies are presented (modelling of particle agglomeration for dose metrics, and consensus for NM dissolution), along with a survey of the currently implemented metadata schema in existing nanosafety databases. We conclude by offering recommendations on the steps forward and the needed workflows for metadata capture to ensure FAIR nanosafety data.
引用
收藏
页码:1 / 49
页数:49
相关论文
共 32 条
  • [31] Promoting FAIR Data Through Community-driven Agile Design: the Open Data Commons for Spinal Cord Injury (odc-sci.org)
    Abel Torres-Espín
    Carlos A. Almeida
    Austin Chou
    J. Russell Huie
    Michael Chiu
    Romana Vavrek
    Jeff Sacramento
    Michael B. Orr
    John C. Gensel
    Jeffery S. Grethe
    Maryann E. Martone
    Karim Fouad
    Adam R. Ferguson
    Neuroinformatics, 2022, 20 : 203 - 219
  • [32] What Information Does Your EHR Contain? Automatic Generation of a Clinical Metadata Warehouse (CMDW) to Support Identification and Data Access Within Distributed Clinical Research Networks
    Bruland, Philipp
    Doods, Justin
    Storck, Michael
    Dugas, Martin
    MEDINFO 2017: PRECISION HEALTHCARE THROUGH INFORMATICS, 2017, 245 : 313 - 317