ChromoWheel: a new spin on eukaryotic chromosome visualization

被引:7
|
作者
Ekdahl, S [1 ]
Sonnhammer, ELL [1 ]
机构
[1] Karolinska Inst, Ctr Genom & Bioinformat, S-17177 Stockholm, Sweden
关键词
D O I
10.1093/bioinformatics/btg448
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Summary: ChromoWheel is an Internet browser application for generating whole-genome illustrations. It can be used to depict chromosomes, genes and relations between chromosomal loci. The circular layout of chromosomes is advantageous for showing relationships between different chromosomes, as the connecting line never crosses over a chromosome. All graphical image components are in the vector-based format Scalable Vector Graphics, which are highly scaleable and admit user interaction. ChromoWheel can either be run with user-provided data in the generic SFS format, or as a browser front-end for precompiled genomic data.
引用
收藏
页码:576 / 577
页数:2
相关论文
共 50 条
  • [21] Basic mechanism of eukaryotic chromosome segregation
    Yanagida, M
    PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2005, 360 (1455) : 609 - 621
  • [22] PROGRESS IN VISUALIZATION OF EUKARYOTIC GENE-TRANSCRIPTION
    TRENDELENBURG, MF
    HUMAN GENETICS, 1983, 63 (03) : 197 - 215
  • [23] Circular permutation of a synthetic eukaryotic chromosome with the telomerator
    Mitchell, Leslie A.
    Boeke, Jef D.
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2014, 111 (48) : 17003 - 17010
  • [24] Minichromosome maintenance proteins in eukaryotic chromosome segregation
    Mehta, Gunjan
    Sanyal, Kaustuv
    Abhishek, Suman
    Rajakumara, Eerappa
    Ghosh, Santanu K.
    BIOESSAYS, 2022, 44 (01)
  • [25] Total Synthesis of a Functional Designer Eukaryotic Chromosome
    Annaluru, Narayana
    Muller, Heloise
    Mitchell, Leslie A.
    Ramalingam, Sivaprakash
    Stracquadanio, Giovanni
    Richardson, Sarah M.
    Dymond, Jessica S.
    Kuang, Zheng
    Scheifele, Lisa Z.
    Cooper, Eric M.
    Cai, Yizhi
    Zeller, Karen
    Agmon, Neta
    Han, Jeffrey S.
    Hadjithomas, Michalis
    Tullman, Jennifer
    Caravelli, Katrina
    Cirelli, Kimberly
    Guo, Zheyuan
    London, Viktoriya
    Yeluru, Apurva
    Murugan, Sindurathy
    Kandavelou, Karthikeyan
    Agier, Nicolas
    Fischer, Gilles
    Yang, Kun
    Martin, J. Andrew
    Bilgel, Murat
    Bohutski, Pavlo
    Boulier, Kristin M.
    Capaldo, Brian J.
    Chang, Joy
    Charoen, Kristie
    Choi, Woo Jin
    Deng, Peter
    DiCarlo, James E.
    Doong, Judy
    Dunn, Jessilyn
    Feinberg, Jason I.
    Fernandez, Christopher
    Floria, Charlotte E.
    Gladowski, David
    Hadidi, Pasha
    Ishizuka, Isabel
    Jabbari, Javaneh
    Lau, Calvin Y. L.
    Lee, Pablo A.
    Li, Sean
    Lin, Denise
    Linder, Matthias E.
    SCIENCE, 2014, 344 (6179) : 55 - 58
  • [26] Analysis and visualization of chromosome information
    Tenreiro Machado, J. A.
    Costa, Antonio C.
    Quelhas, Maria Dulce
    GENE, 2012, 491 (01) : 81 - 87
  • [27] PROTOPLAST FORMATION AND THE VISUALIZATION OF NUCLEI IN THE EUKARYOTIC MICROBE, ACHLYA
    SCHAFRICK, MT
    HORGEN, PA
    CYTOBIOS, 1978, 22 (86) : 97 - 104
  • [28] Eukaryotic Chromosome DNA Replication: Where, When and How?
    Masai, Hisao
    Matsumoto, Seiji
    You, Zhiying
    Yoshizawa-Sugata, Naoko
    Oda, Masako
    ANNUAL REVIEW OF BIOCHEMISTRY, VOL 79, 2010, 79 : 89 - 130
  • [29] EUKARYOTIC CHROMOSOME-REPLICATION AND THE RADIAL LOOP MODEL
    WILKINS, AS
    JOURNAL OF THEORETICAL BIOLOGY, 1981, 89 (04) : 715 - 717
  • [30] EUKARYOTIC CHROMOSOME - STRUCTURE, DNA SEQUENCES, AND FUNCTIONAL ORGANIZATION
    PANITZ, R
    BIOLOGISCHES ZENTRALBLATT, 1978, 97 (01): : 1 - 27