Differentiation of Campylobacter jejuni and Campylobacter coli Using Multiplex-PCR and High Resolution Melt Curve Analysis

被引:13
|
作者
Banowary, Banya [1 ,2 ,3 ]
Dang, Van Tuan [1 ,2 ,3 ]
Sarker, Subir [1 ,2 ,3 ]
Connolly, Joanne H. [1 ,2 ,3 ]
Chenu, Jeremy [4 ]
Groves, Peter [5 ]
Ayton, Michelle [1 ,2 ,3 ]
Raidal, Shane [1 ,2 ,3 ]
Devi, Aruna [6 ]
Vanniasinkam, Thiru [2 ,3 ,6 ]
Ghorashi, Seyed A. [1 ,2 ,3 ]
机构
[1] Charles Sturt Univ, Sch Anim & Vet Sci, Wagga Wagga, NSW, Australia
[2] Graham Ctr Agr Innovat, NSW Dept Primary Ind, Wagga Wagga, NSW, Australia
[3] Charles Sturt Univ, Wagga Wagga, NSW, Australia
[4] Birling Avian Labs, Bringelly, NSW, Australia
[5] Univ Sydney, Sydney, NSW 2006, Australia
[6] Charles Sturt Univ, Sch Biomed Sci, Wagga Wagga, NSW, Australia
来源
PLOS ONE | 2015年 / 10卷 / 09期
关键词
FRAGMENT-LENGTH-POLYMORPHISM; SINGLE NUCLEOTIDE POLYMORPHISMS; FIELD GEL-ELECTROPHORESIS; REAL-TIME PCR; FECAL SAMPLES; GENE; IDENTIFICATION; ASSAY; STRAINS; REGION;
D O I
10.1371/journal.pone.0138808
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Campylobacter spp. are important causes of bacterial gastroenteritis in humans in developed countries. Among Campylobacter spp. Campylobacter jejuni (C. jejuni) and C. coli are the most common causes of human infection. In this study, a multiplex PCR (mPCR) and high resolution melt (HRM) curve analysis were optimized for simultaneous detection and differentiation of C. jejuni and C. coli isolates. A segment of the hippuricase gene (hipO) of C. jejuni and putative aspartokinase (asp) gene of C. coli were amplified from 26 Campylobacter isolates and amplicons were subjected to HRM curve analysis. The mPCR-HRM was able to differentiate between C. jejuni and C. coli species. All DNA amplicons generated by mPCR were sequenced. Analysis of the nucleotide sequences from each isolate revealed that the HRM curves were correlated with the nucleotide sequences of the amplicons. Minor variation in melting point temperatures of C. coli or C. jejuni isolates was also observed and enabled some intraspecies differentiation between C. coli and/or C. jejuni isolates. The potential of PCR-HRM curve analysis for the detection and speciation of Campylobacter in additional human clinical specimens and chicken swab samples was also confirmed. The sensitivity and specificity of the test were found to be 100% and 92%, respectively. The results indicated that mPCR followed by HRM curve analysis provides a rapid (8 hours) technique for differentiation between C. jejuni and C. coli isolates.
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页数:20
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