Nmrglue: an open source Python']Python package for the analysis of multidimensional NMR data

被引:225
|
作者
Helmus, Jonathan J. [1 ]
Jaroniec, Christopher P. [1 ]
机构
[1] Ohio State Univ, Dept Chem & Biochem, Columbus, OH 43210 USA
基金
美国国家科学基金会; 美国国家卫生研究院;
关键词
Nuclear magnetic resonance; Solid-state NMR; Data processing; Data analysis; Data visualization; !text type='Python']Python[!/text; Open source; SOLID-STATE NMR; RESONANCE; SOFTWARE; SIMULATION; TOOL; SPECTROSCOPY; PROTEINS; SYSTEM; PHASE; C-13;
D O I
10.1007/s10858-013-9718-x
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Nmrglue, an open source Python package for working with multidimensional NMR data, is described. When used in combination with other Python scientific libraries, nmrglue provides a highly flexible and robust environment for spectral processing, analysis and visualization and includes a number of common utilities such as linear prediction, peak picking and lineshape fitting. The package also enables existing NMR software programs to be readily tied together, currently facilitating the reading, writing and conversion of data stored in Bruker, Agilent/Varian, NMRPipe, Sparky, SIMPSON, and Rowland NMR Toolkit file formats. In addition to standard applications, the versatility offered by nmrglue makes the package particularly suitable for tasks that include manipulating raw spectrometer data files, automated quantitative analysis of multidimensional NMR spectra with irregular lineshapes such as those frequently encountered in the context of biomacromolecular solid-state NMR, and rapid implementation and development of unconventional data processing methods such as covariance NMR and other non-Fourier approaches. Detailed documentation, install files and source code for nmrglue are freely available at http://nmrglue.com. The source code can be redistributed and modified under the New BSD license.
引用
收藏
页码:355 / 367
页数:13
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