Compressed Suffix Trees for Repetitive Texts

被引：0

作者：

Abeliuk, Andres ^{[1
]}

Navarro, Gonzalo ^{[1
]}

机构：

[1] Univ Chile, Dept Comp Sci, Santiago, Chile

来源：

STRING PROCESSING AND INFORMATION RETRIEVAL: 19TH INTERNATIONAL SYMPOSIUM, SPIRE 2012 | 2012年 / 7608卷

关键词：

D O I：

暂无

中图分类号：

TP [自动化技术、计算机技术];

学科分类号：

0812 ;

摘要：

We design a new compressed suffix tree specifically tailored to highly repetitive text collections. This is particularly useful for sequence analysis on large collections of genomes of the close species. We build on an existing compressed suffix tree that applies statistical compression, and modify it so that it works on the grammar-compressed version of the longest common prefix array, whose differential version inherits much of the repetitiveness of the text.

引用

页码：30 / 41

页数：12

共 50 条

[31] Compressed compact suffix arrays
Mäkinen, V
Navarro, G
[J]. COMBINATORIAL PATTERN MATCHING, PROCEEDINGS, 2004, 3109 : 420 - 433
[32] Relative Suffix Trees
Farruggia, Andrea
Gagie, Travis
Navarro, Gonzalo
Puglisi, Simon J.
Siren, Jouni
[J]. COMPUTER JOURNAL, 2018, 61 (05): : 773 - 788
[33] Compressed Spaced Suffix Arrays
Gagie T.
Manzini G.
Valenzuela D.
[J]. Mathematics in Computer Science, 2017, 11 (2) : 151 - 157
[34] Transformation of suffix arrays into suffix trees on the MPI environment
Lee, Inbok
Iliopoulos, Costas S.
Ohn, Syng-Yup
[J]. ROUGH SETS, FUZZY SETS, DATA MINING AND GRANULAR COMPUTING, PROCEEDINGS, 2007, 4482 : 248 - +
[35] Graphical pan-genome analysis with compressed suffix trees and the Burrows-Wheeler transform
Baier, Uwe
Beller, Timo
Ohlebusch, Enno
[J]. BIOINFORMATICS, 2016, 32 (04) : 497 - 504
[36] The Virtual Suffix Tree: An Efficient Data Structure for Suffix Trees and Suffix Arrays
Lin, Jie
Jiang, Yue
Adjeroh, Don
[J]. PROCEEDINGS OF THE PRAGUE STRINGOLOGY CONFERENCE 2008, 2008, : 68 - 83
[37] Space efficient suffix trees
Munro, I
Raman, V
Rao, SS
[J]. FOUNDATIONS OF SOFTWARE TECHNOLOGY AND THEORETICAL COMPUTER SCIENCE, 1998, 1530 : 186 - 196
[38] 40 Years of Suffix Trees
Apostolico, Alberto
Crochemore, Maxime
Farach-Colton, Martin
Galil, Zvi
Muthukrishnan, S.
[J]. COMMUNICATIONS OF THE ACM, 2016, 59 (04) : 66 - 73
[39] The Average Profile of Suffix Trees
Ward, Mark Daniel
[J]. PROCEEDINGS OF THE NINTH WORKSHOP ON ALGORITHM ENGINEERING AND EXPERIMENTS AND THE FOURTH WORKSHOP ON ANALYTIC ALGORITHMICS AND COMBINATORICS, 2007, : 183 - 193
[40] Weighted Ancestors in Suffix Trees
Gawrychowski, Pawel
Lewenstein, Moshe
Nicholson, Patrick K.
[J]. ALGORITHMS - ESA 2014, 2014, 8737 : 455 - 466

← 1 2 3 4 5 →