De Novo Structure-Based Design of Bis-amidoxime Uranophiles

被引:50
|
作者
Vukovic, Sinisa [1 ]
Hay, Benjamin P. [1 ]
机构
[1] Oak Ridge Natl Lab, Div Chem Sci, Oak Ridge, TN 37831 USA
基金
美国能源部;
关键词
COMPUTER-AIDED-DESIGN; MM3; FORCE-FIELD; HOST-GUEST COMPLEXATION; MOLECULAR-MECHANICS; SELECTIVE LIGANDS; RATIONAL DESIGN; CHIRAL LIGANDS; GUIDED DESIGN; STABILITY; MODEL;
D O I
10.1021/ic401089u
中图分类号
O61 [无机化学];
学科分类号
070301 ; 081704 ;
摘要
This paper presents a computational approach to the deliberate design of host architectures that recognize and bind specific guests. De novo molecule building software, Host Designer, is interfaced with molecular mechanics software, PCModel, providing a tool for generating and screening millions of potential structures The efficacy of this computer aided design methodology is illustrated with a search for bis-amidoxime chelates that are structurally organized for complexation with the uranyl cation.
引用
收藏
页码:7805 / 7810
页数:6
相关论文
共 50 条
  • [11] ENPDA:: an evolutionary structure-based de novo peptide design algorithm
    Belda, I
    Madurga, S
    Llorà, X
    Martinell, M
    Tarragó, T
    Piqueras, MG
    Nicolás, E
    Giralt, E
    JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 2005, 19 (08) : 585 - 601
  • [12] SkelGen: a general tool for structure-based de novo ligand design
    Dean, Philip M.
    Firth-Clark, Stuart
    Harris, William
    Kirton, Stewart B.
    Todorov, Nikolay P.
    EXPERT OPINION ON DRUG DISCOVERY, 2006, 1 (02) : 179 - 189
  • [13] Structure-based discovery and de novo design of HIV fusion inhibitors
    Allen, William
    Rizzo, Robert
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2015, 249
  • [14] De novo structure-based design of factor XA inhibitors.
    Cheney, DL
    Mason, JS
    Becker, MR
    Ewing, RW
    Pauls, HW
    Todorov, N
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 1998, 215 : U861 - U861
  • [15] Structure-based De novo design of estrone sulfatase inhibitors.
    Ghosh, D
    Ghosh, D
    CLINICAL CANCER RESEARCH, 2005, 11 (24) : 9052S - 9052S
  • [16] Recent Advances in Automated Structure-Based De Novo Drug Design
    Tang, Yidan
    Moretti, Rocco
    Meiler, Jens
    JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2024, 64 (06) : 1794 - 1805
  • [17] ENPDA: an evolutionary structure-based de novo peptide design algorithm
    Ignasi Belda
    Sergio Madurga
    Xavier Llorà
    Marc Martinell
    Teresa Tarragó
    Mireia G. Piqueras
    Ernesto Nicolás
    Ernest Giralt
    Journal of Computer-Aided Molecular Design, 2005, 19 : 585 - 601
  • [18] Role for chemoinformatics in structure-based de novo ligand design.
    Johnson, AP
    Boda, K
    Lengyel, T
    Weaver, S
    Vigh, A
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2004, 228 : U363 - U363
  • [19] De novo structure-based design of bisurea hosts for tetrahedral oxoanion guests
    Bryantsev, VS
    Hay, BP
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2006, 128 (06) : 2035 - 2042
  • [20] RELATION: A Deep Generative Model for Structure-Based De Novo Drug Design
    Wang, Mingyang
    Hsieh, Chang-Yu
    Wang, Jike
    Wang, Dong
    Weng, Gaoqi
    Shen, Chao
    Yao, Xiaojun
    Bing, Zhitong
    Li, Honglin
    Cao, Dongsheng
    Hou, Tingjun
    JOURNAL OF MEDICINAL CHEMISTRY, 2022, : 9478 - 9492