We investigate the possibility of generating neutrino masses in the context of split supersymmetric scenarios where all sfermions are very heavy. All relevant contributions coming from the R-parity violating terms to the neutrino mass matrix up to one-loop level are computed showing the importance of the Higgs bosons one-loop corrections. We conclude that it is not possible to generate all neutrino masses and mixings in split SUSY with bilinear R-parity violating interactions. In the case of partial split SUSY, the one-loop Higgs bosons contributions are enough to generate the neutrino masses and mixings in agreement with the experiment. In the context of minimal SUSY SU(5), we find new contributions that help us to generate neutrino masses in the case of split SUSY.