Whole exome sequencing highlights variants in association with Keratoconus in Jordanian families

被引:10
|
作者
Froukh, Tawfiq [1 ]
Hawwari, Ammar [2 ]
Al Zubi, Khalid [3 ]
机构
[1] Philadelphia Univ, Dept Biotechnol & Genet Engn, Jerash Rd, Amman 11118, Jordan
[2] Sight & Insight Eye Clin, Amman, Jordan
[3] Mutah Univ, Fac Med, Al Karak, Jordan
关键词
NGS; Genome; Ocular; Epithelial; Dry-eye; FINGER PROTEIN GENE; INTELLECTUAL DISABILITY; SEED REGION; MUTATIONS; ZNF469; VSX1; IDENTIFICATION; SIFT; SOD1;
D O I
10.1186/s12881-020-01112-z
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Background Keratoconus (KC) is usually bilateral, noninflammatory progressive corneal ectasia in which the cornea becomes progressively thin and conical, resulting in myopia, irregular astigmatism, and corneal scarring. Methods Eight families characterized by consanguineous marriages and/or multiple keratoconic individuals were examined genetically. Whole exome sequencing was done as trio or quadro per family. The output of the filtration procedure, based on minor allele frequency (MAF) less than 0.01 for homozygous variants and MAF equals 0 for heterozygous variants, is 22 missense variants. Results Based on the gene/protein function five candidate variants were highlighted in four families. Two variants were highlighted in one family within the genesMYOFandSTX2, and one variant is highlighted in each of the other three families within the genes:COL6A5,ZNF676andZNF765. Conclusion This study is one of the very rare that highlights genetic variants in association with KC.
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页数:6
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