Tasuke: a web-based visualization program for large-scale resequencing data

被引：25

作者：

Kumagai, Masahiko ^{[1
]}

Kim, Jungsok ^{[1
]}

Itoh, Ryutaro ^{[1
,2
]}

Itoh, Takeshi ^{[1
]}

机构：

[1] Natl Inst Agrobiol Sci, Agrogen Res Ctr, Bioinformat Res Unit, Tsukuba, Ibaraki 3058602, Japan

[2] DYNACOM Co Ltd Chiba, Chiba 2617125, Japan

来源：

BIOINFORMATICS | 2013年 / 29卷 / 14期

关键词：

FORMAT; GENOME;

D O I：

10.1093/bioinformatics/btt295

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Because an enormous amount of sequence data is being collected, a method to effectively display sequence variation information is urgently needed. TASUKE is a web application that visualizes large-scale resequencing data generated by next-generation sequencing technologies and is suitable for rapid data release to the public on the web. The variation and read depths of multiple genomes, as well as annotations, can be shown simultaneously at various scales. We demonstrate the use of TASUKE by applying it to 50 rice and 100 human genome resequencing datasets.

引用

页码：1806 / 1808

页数：3

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