QM/MM Excited State Molecular Dynamics and Fluorescence Spectroscopy of BODIPY

被引:51
|
作者
Briggs, Edward A. [1 ]
Besley, Nicholas A. [1 ]
Robinson, David [1 ]
机构
[1] Univ Nottingham, Sch Chem, Nottingham NG7 2RD, England
来源
JOURNAL OF PHYSICAL CHEMISTRY A | 2013年 / 117卷 / 12期
关键词
CRYSTAL-STRUCTURE; DYE; ELECTROCHEMISTRY; ABSORPTION; CHEMISTRY; SOLVENT; LIQUID; PHOTOPHYSICS; DERIVATIVES; COMPLEXES;
D O I
10.1021/jp312229b
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Absorption and emission spectra arising from the lowest energy transition in BODIPY have been simulated in the gas phase and water using a quantum mechanics/molecular mechanics (QM/MM) approach. Kohn-Sham density functional theory (DFT) is used to calculate both ground (So) and first excited (SI) states using the maximum overlap method to obtain the SI state. This approach gives ground and excited state structures in good agreement with structures found using multiconfigurational perturbation theory (CASPT2). Application of a post-self-consistent field spin-purification relationship also yields transition energies in agreement with CASPT2 and available experimental data. Spectral bands were simulated using many structures taken from ab initio molecular dynamics simulations of the ground and first excited states. In these simulations, DFT is used for BODIPY, and in the condensed phase simulations the water molecules are treated classically. The resulting spectra show a blue shift of 0.3 eV in both absorption and emission bands in water compared to the gas phase. A Stokes shift of about 0.1 eV is predicted, and the width of the emission band in solution is significantly broader than the absorption band. These results are consistent with experimental data for BODIPY and closely related dyes, and demonstrate how both absorption and emission spectra in solution can be simulated using a quantum mechanical treatment of the electronic structure of the solute.
引用
收藏
页码:2644 / 2650
页数:7
相关论文
共 50 条
  • [41] Constrained Excited-State Structure in Molecular Crystals by Means of the QM/MM Approach: Toward the Prediction of Photocrystallographic Results
    Kaminski, Radoslaw
    Schmokel, Mette S.
    Coppens, Philip
    JOURNAL OF PHYSICAL CHEMISTRY LETTERS, 2010, 1 (15): : 2349 - 2353
  • [42] A fluorescence study of the excited-state dynamics of boron dipyrrin molecular rotors
    Volchkov, V. V.
    Khimich, M. N.
    Mel'nikov, M. Ya
    Uzhinov, B. M.
    HIGH ENERGY CHEMISTRY, 2013, 47 (05) : 224 - 229
  • [43] A fluorescence study of the excited-state dynamics of boron dipyrrin molecular rotors
    V. V. Volchkov
    M. N. Khimich
    M. Ya. Mel’nikov
    B. M. Uzhinov
    High Energy Chemistry, 2013, 47 : 224 - 229
  • [44] QM/MM Molecular Dynamics Simulations Revealed Catalytic Mechanism of Urease
    Saito, Toru
    Takano, Yu
    JOURNAL OF PHYSICAL CHEMISTRY B, 2022, 126 (10): : 2087 - 2097
  • [45] QM/MM Molecular Dynamics Simulation on the Mechanisms for the Hydrolytic Deamination of Nicotinamidase
    Duan Xinli
    Zhang Xin
    Lei Ming
    CHEMICAL JOURNAL OF CHINESE UNIVERSITIES-CHINESE, 2015, 36 (12): : 2491 - 2496
  • [46] QM/MM/Continuum style TDDFT molecular dynamics simulation methods
    Thellamurege, Nandun M.
    Si, Dejun
    Li, Hui
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2011, 242
  • [47] Excited state dynamics of a partially conjugated polymer studied by feratosecond fluorescence upconversion spectroscopy
    Fakis, M
    Polyzos, I
    Tsigaridas, G
    Giannetas, V
    Persephonis, P
    CHEMICAL PHYSICS LETTERS, 2004, 394 (4-6) : 372 - 376
  • [48] Molecular dynamics by flexible-boundary QM/MM: On-the-fly partial charge transfer between QM and MM subsystems
    Pezeshki, Soroosh
    Lin, Hai
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2015, 249
  • [49] Cytosine excited state dynamics studied by femtosecond fluorescence upconversion and transient absorption spectroscopy
    Sharonov, A
    Gustavsson, T
    Carré, V
    Renault, E
    Markovitsi, D
    CHEMICAL PHYSICS LETTERS, 2003, 380 (1-2) : 173 - 180
  • [50] MD/QM excited-state approach to predicting tryptophan fluorescence in proteins
    Kofke, Elijah
    Vorwerk, Kristine
    Kennerly, William
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2016, 251