Comparative transcriptomic analysis reveals the mechanism of leech environmental adaptation

被引:10
|
作者
Liu, Zichao [1 ]
Zhao, Feng [2 ]
Tong, Xiangrong [1 ]
Liu, Kaiqing [1 ]
Wang, Bin [1 ]
Yang, Lijiang [1 ]
Ning, Tiao [3 ]
Wang, Yanjie [4 ]
Zhao, Fang [2 ]
Wang, Dingkang [3 ]
Wang, Debin [1 ]
机构
[1] Kunming Univ, Kunming Key Lab Hydroecol Restorat Dianchi Lake, Key Lab Special Biol Resource Dev & Utilizat Univ, Dept Biol Sci & Technol, Kunming 650214, Yunnan, Peoples R China
[2] Puer Univ, Inst Comparat Study Tradit Mat Med, Dept Biol & Chem, Key Lab Subtrop Med Edible Resources Dev & Utiliz, Puer 665000, Yunnan, Peoples R China
[3] Kunming Univ, Coll Agr, Kunming 650214, Yunnan, Peoples R China
[4] Chinese Acad Sci, Key Lab Anim Models & Human Dis Mech, Chinese Acad Sci & Yunnan Prov, Kunming Inst Zool, Kunming 650223, Yunnan, Peoples R China
基金
中国国家自然科学基金;
关键词
Leech; Transcriptome; Environmental adaptation; Olfactory transduction; RNA-SEQ; MEDICINAL LEECH; SALIVARY TRANSCRIPTOME; MACROBDELLA-DECORA; DNA; SYSTEM; EXPRESSION; DIVERSITY; PEPTIDES; DATASETS;
D O I
10.1016/j.gene.2018.04.063
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The medicinal leeches have been widely utilized in medical procedures for thousands of years. Recently, there were more and more transcriptomes of leech published online including the medicinal leech (Hirudo medicinalis) and some other leeches. However, leech's genetic backgrounds are still largely unknown. In this report, transcriptomes of three phylogenetically close leeches (Poecilobdella javanica, Whitmania pigra, and Haemadipsa cavatuses) were established by RNA-seq technique for studying their genetic mechanisms of environmental adaption. Over 110 million high-quality reads were generated and assembled into unique transcriptom (reads = 200 bp). 27,138 out of de novo assembled transcripts (41.77%) were assigned to one or more GO terms. Additionally, the transcripts were detected in 217 predicted KEGG pathways. The enriched genes were involved in protein metabolism, GPCRs and pathogen-resistant pathways. The results showed that the great variations existed in gene expression of olfactory transduction pathway among three leech species. The comparisons of leech species hinted at the underlying mechanism of leeches adapting well in various environments. Our study will provide useful rationales for future studies of leeches and other annelid species.
引用
收藏
页码:70 / 77
页数:8
相关论文
共 50 条
  • [21] Comparative Genomics of Fungi in Nectriaceae Reveals Their Environmental Adaptation and Conservation Strategies
    Rissi, Daniel Vasconcelos
    Ijaz, Maham
    Baschien, Christiane
    JOURNAL OF FUNGI, 2024, 10 (09)
  • [22] Comparative Transcriptomic Analysis Reveals the Negative Response Mechanism of Peanut Root Morphology and Nitrate Assimilation to Nitrogen Deficiency
    Li, Lijie
    Cheng, Xiangguo
    Kong, Xiangjun
    Jia, Peipei
    Wang, Xiaohui
    Zhang, Lei
    Zhang, Xiaotian
    Zhang, Yi
    Zhang, Zhiyong
    Zhang, Baohong
    PLANTS-BASEL, 2023, 12 (04):
  • [23] Comparative Transcriptomic Analysis Reveals the Regulatory Mechanism of Terpene Trilactones Improvement by Exogenous Methyl Jasmonate in Ginkgo biloba
    Tan, Junping
    Han, Muxian
    Mao, Dun
    Cheng, Shuiyuan
    Ye, Jiabao
    Liu, Xiaomeng
    Zhang, Xian
    Zheng, Jiarui
    Xu, Feng
    Chen, Zexiong
    Zhang, Weiwei
    Liao, Yongling
    PLANT MOLECULAR BIOLOGY REPORTER, 2022, 40 (01) : 81 - 94
  • [24] Comparative Transcriptomic Analysis Reveals the Regulatory Mechanism of Terpene Trilactones Improvement by Exogenous Methyl Jasmonate in Ginkgo biloba
    Junping Tan
    Muxian Han
    Dun Mao
    Shuiyuan Cheng
    Jiabao Ye
    Xiaomeng Liu
    Xian Zhang
    Jiarui Zheng
    Feng Xu
    Zexiong Chen
    Weiwei Zhang
    Yongling Liao
    Plant Molecular Biology Reporter, 2022, 40 : 81 - 94
  • [25] Comparative transcriptomic analysis reveals genetic divergence and domestication genes in Diospyros
    Changfei Guan
    Shuyuan Liu
    Mengke Wang
    Hao Ji
    Xiaofeng Ruan
    Renzi Wang
    Yong Yang
    BMC Plant Biology, 19
  • [26] Comparative transcriptomic analysis reveals genetic divergence and domestication genes in Diospyros
    Guan, Changfei
    Liu, Shuyuan
    Wang, Mengke
    Ji, Hao
    Ruan, Xiaofeng
    Wang, Renzi
    Yang, Yong
    BMC PLANT BIOLOGY, 2019, 19 (1)
  • [27] Comparative Transcriptomic Analysis Reveals the Functionally Segmented Intestine in Tunicate Ascidian
    Zhang, Wei
    Jiang, An
    Yu, Haiyan
    Dong, Bo
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2023, 24 (07)
  • [28] Global Transcriptomic Analysis Reveals the Mechanism of Phelipanche aegyptiaca Seed Germination
    Yao, Zhaoqun
    Tian, Fang
    Cao, Xiaolei
    Xu, Ying
    Chen, Meixiu
    Xiang, Benchun
    Zhao, Sifeng
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2016, 17 (07)
  • [29] Transcriptomic analysis reveals the regulatory mechanism of tetraspore formation in Gracilariopsis lemaneiformis
    Sun, Deguang
    Zhou, Xueyou
    Sun, Xue
    Xu, Nianjun
    FRONTIERS IN MARINE SCIENCE, 2023, 9
  • [30] Transcriptomic analysis reveals the potential biological mechanism of AIS and lung adenocarcinoma
    Qin, Rong-Xing
    Yang, Yue
    Chen, Jia-Feng
    Huang, Li-Juan
    Xu, Wei
    Qin, Qing-Chun
    Liang, Xiao-Jun
    Lai, Xin-Yu
    Huang, Xiao-Ying
    Xie, Min-Shan
    Chen, Li
    FRONTIERS IN NEUROLOGY, 2023, 14