Towards global distribution maps of unicellular organisms such as calcareous dinophytes based on DNA sequence information

被引:5
|
作者
Calasan, Anze Zerdoner [1 ,2 ]
Kretschmann, Juliane [1 ]
Filipowicz, Natalia H. [3 ]
Irimia, Ramona-Elena [4 ,5 ]
Kirsch, Monika [6 ]
Gottschling, Marc [1 ]
机构
[1] Ludwig Maximilians Univ Munchen, GeoBioctr, Dept Biol Systemat Bot & Mykol, Menzinger Str 67, D-80638 Munich, Germany
[2] Univ Osnabruck, Sch Biol & Chem, Dept Bot, Barbarastr 11, D-49076 Osnabruck, Germany
[3] Med Univ Gdansk, Dept Biol & Pharmaceut Bot, Hallera 107, PL-80416 Gdansk, Poland
[4] Alexandru Ioan Cuza Univ, Fac Biol, Carol 1,20A, RO-700505 Iasi, Romania
[5] Stejarul Res Ctr Biol Sci, NIRDBS, Alexandru Cel Bun St 6, RO-610004 Piatra Neamt, Romania
[6] Univ Bremen, Fachbereich Geowissensch, Fachrichtung Hist Geol Palaontol, Klagenfurter Str, D-28359 Bremen, Germany
关键词
Biogeography; Black Sea; Dinoflagellates; Dispersal; Niche; SCRIPPSIELLA-TROCHOIDEA; TAXONOMIC CLARIFICATION; MORPHOLOGICAL VARIATION; DINOFLAGELLATE DIVERSITY; NICHE MODELS; THORACOSPHAERACEAE; BIOGEOGRAPHY; ATLANTIC; PATTERNS; SEA;
D O I
10.1007/s12526-018-0848-y
中图分类号
X176 [生物多样性保护];
学科分类号
090705 ;
摘要
Despite recent fruitful attempts to elucidate microbial biogeography in more detail, knowledge of distribution still lags behind for dinophytes. Evolutionary phenomena, such as cryptic speciation and modification due to the environment, hamper reliable conclusions about the distribution of this important plankton group. We combined newly collected samples from the Black Sea (ten new strains from three localities) with occurrence data, which have been gathered extensively over the past decade, in order to provide the first global distribution maps of four specific ribotypes assigned to the Scrippsiella lineage (Thoracosphaeraceae, Peridiniales) collected at a total of 39 sites. They showed a wide, partly overlapping distribution and shared the presence primarily at the coastal localities. Differences in abundance of specific ribotypes were observed, but the ribotype corresponding to the globally most frequently encountered species Scrippsiella acuminata has not yet been found in the Black Sea. We discuss the significance of DNA-based records for distribution maps particularly of unicellular organisms such as dinophytes. Based on a collective approach as exemplified in our study, we may start to understand in detail the ecological basis and the dynamics of the individual colonisation/invasion events, species establishment and consequent distribution in the microbiome, all of which have been changing drastically due to the ongoing climate change.
引用
收藏
页码:749 / 758
页数:10
相关论文
共 50 条
  • [41] Caching on the Move: Towards D2D-based Information Centric Networking for Mobile Content Distribution
    Chandrasekaran, G.
    Wang, N.
    Tafazolli, R.
    40TH ANNUAL IEEE CONFERENCE ON LOCAL COMPUTER NETWORKS (LCN 2015), 2015, : 312 - 320
  • [42] Magnetic Bead-Based Multiplex DNA Sequence Detection of Genetically Modified Organisms Using Quantum Dot-Encoded Silicon Dioxide Nanoparticles
    Zhao, Yuan
    Hao, Changlong
    Ma, Wei
    Yong, Qianqian
    Yan, Wenjing
    Kuang, Hua
    Wang, Libing
    Xu, Chuanlai
    JOURNAL OF PHYSICAL CHEMISTRY C, 2011, 115 (41): : 20134 - 20140
  • [43] Detecting DNA-binding Domain From Sequence and Secondary Structure Information Using Kernel-based Technique
    Fei, Wang
    Chen Lusheng
    2008 3RD INTERNATIONAL CONFERENCE ON INTELLIGENT SYSTEM AND KNOWLEDGE ENGINEERING, VOLS 1 AND 2, 2008, : 200 - +
  • [44] Design of GEO/LEO Double-Layered Satellite Network Based on Rateless Code for Global Information Distribution
    Wang, Chuang
    Bian, Dongming
    Xu, Xingchen
    Cheng, Jian
    Li, Feilong
    WIRELESS AND SATELLITE SYSTEMS, PT I, 2019, 280 : 13 - 24
  • [45] DISMIR: Deep learning-based noninvasive cancer detection by integrating DNA sequence and methylation information of individual cell-free DNA reads
    Li, Jiaqi
    Wei, Lei
    Zhang, Xianglin
    Zhang, Wei
    Wang, Haochen
    Zhong, Bixi
    Xie, Zhen
    Lv, Hairong
    Wang, Xiaowo
    BRIEFINGS IN BIOINFORMATICS, 2021, 22 (06)
  • [46] Research on Three-dimensional Fast Location and Application Platform of Internet of Things Based on Local Information Characterization for Global Distribution Density Information
    Li, Chunyan
    Li, Rui
    2017 INTERNATIONAL CONFERENCE ON COMPUTER SYSTEMS, ELECTRONICS AND CONTROL (ICCSEC), 2017, : 1242 - 1246
  • [47] An Integrated Approach towards Performance-based Funds Distribution: Leveraging a Research Information System across Institutional Boundaries
    Ganslandt, Thomas
    Williamson, Elke
    Schnetz, Esther
    GET THE GOOD CRIS GOING: ENSURING QUALITY OF SERVICE FOR THE USER IN THE ERA, 2008, : 103 - 105
  • [48] A transformer architecture based on BERT and 2D convolutional neural network to identify DNA enhancers from sequence information
    Le, Nguyen Quoc Khanh
    Ho, Quang-Thai
    Nguyen, Trinh-Trung-Duong
    Ou, Yu-Yen
    BRIEFINGS IN BIOINFORMATICS, 2021, 22 (05)
  • [49] XGB4mcPred: Identification of DNA N4-Methylcytosine Sites in Multiple Species Based on an eXtreme Gradient Boosting Algorithm and DNA Sequence Information
    Wang, Xiao
    Lin, Xi
    Wang, Rong
    Fan, Kai-Qi
    Han, Li-Jun
    Ding, Zhao-Yuan
    ALGORITHMS, 2021, 14 (10)
  • [50] Global analysis of disease-related DNA sequence variation in 10 healthy individuals: Implications for whole genome-based clinical diagnostics
    Moore, Barry
    Hu, Hao
    Singleton, Marc
    Reese, Martin G.
    De La Vega, Francisco M.
    Yandell, Mark
    GENETICS IN MEDICINE, 2011, 13 (03) : 210 - 217