Cysteine pKa Values for the Bacterial Peroxiredoxin AhpC

被引:86
|
作者
Nelson, Kimberly J. [1 ]
Parsonage, Derek [1 ]
Hall, Andrea [2 ]
Karplus, P. Andrew [2 ]
Poole, Leslie B. [1 ]
机构
[1] Wake Forest Univ, Dept Biochem, Sch Med, Winston Salem, NC 27157 USA
[2] Oregon State Univ, Dept Biochem & Biophys, Corvallis, OR 97331 USA
基金
美国国家卫生研究院; 美国国家科学基金会;
关键词
D O I
10.1021/bi801718d
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Salmonella typhimurium AhpC is a founding member of the peroxiredoxin family, a ubiquitous group of cysteine-based peroxidases with high reactivity toward hydrogen peroxide, organic hydroperoxides, and peroxynitrite. For all of the peroxiredoxins, the catalytic cysteine, referred to as the peroxidatic cysteine (C-p), acts as a nucleophile in attacking the peroxide substrate, forming a cysteine sulfenic acid at the active site. Because thiolates are far stronger nucleophiles than thiol groups, it is generally accepted that cysteine-based peroxidases should exhibit pK(a) values lower than an unperturbed value of 8.3-8.5. In this investigation, several independent approaches were used to assess the pK(a) of the two cysteinyl residues of AhpC. Methods using two different iodoacetamide derivatives yielded unperturbed pK(a) values (7.9-8.7) for both cysteines, apparently due to reactivity with the wrong conformation of C-p (i.e., locally unfolded and flipped out of the active site), as supported by X-ray crystallographic analyses. A functional pK(a) of 5.94 +/- 0.10 presumably reflecting the titration of C-p within the fully folded active site was obtained by measuring AhpC competition with horseradish peroxidase for hydrogen peroxide; this value is quite similar to that obtained by analyzing the pH dependence of the epsilon(240) of wild-type AhpC (5.84 +/- 0.02) and similar to those obtained for two typical 2-cysteine peroxiredoxins from Saccharomyces cerevisiae (5.4 and 6.0). Thus, the pK(a) value of AhpC balances the need for a deprotonated thiol (at pH 7, similar to 90% of the C-p would be deprotonated) with the fact that thiolates with higher pK(a) values are stronger nucleophiles.
引用
收藏
页码:12860 / 12868
页数:9
相关论文
共 50 条
  • [31] Cloning and characterization of Arenicola marina peroxiredoxin 6, an annelid two-cysteine peroxiredoxin highly homologous to mammalian one-cysteine peroxiredoxins
    Loumaye, Eleonore
    Andersen, Ann C.
    Clippe, Andre
    Degand, Herve
    Dubuisson, Marlene
    Zal, Franck
    Morsomme, Pierre
    Rees, Jean-Francois
    Knoops, Bernard
    FREE RADICAL BIOLOGY AND MEDICINE, 2008, 45 (04) : 482 - 493
  • [32] pKa Values in the Undergraduate Curriculum: What Is the Real pKa of Water?
    Silverstein, Todd P.
    Heller, Stephen T.
    JOURNAL OF CHEMICAL EDUCATION, 2017, 94 (06) : 690 - 695
  • [33] Conformational preferences and pKa value of cysteine residue
    Lee, Joo Yun
    Byun, Byung Jin
    Kang, Young Kee
    JOURNAL OF PHYSICAL CHEMISTRY B, 2008, 112 (36): : 11189 - 11193
  • [34] Benchmarking In Silico Tools for Cysteine pKa Prediction
    Awoonor-Williams, Ernest
    Golosov, Andrei A.
    Hornak, Viktor
    JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2023, 63 (07) : 2170 - 2180
  • [35] NmerA of Tn501 Mercuric Ion Reductase: Structural Modulation of the pKa Values of the Metal Binding Cysteine Thiols
    Ledwidge, Richard
    Hong, Baoyu
    Doetsch, Volker
    Miller, Susan M.
    BIOCHEMISTRY, 2010, 49 (41) : 8988 - 8998
  • [36] Deconstructing the Catalytic Efficiency of Peroxiredoxin-5 Peroxidatic Cysteine
    Portillo-Ledesma, Stephanie
    Sardi, Florencia
    Manta, Bruno
    Victoria Tourn, Maria
    Clippe, Andre
    Knoops, Bernard
    Alvarez, Beatriz
    Laura Coitino, E.
    Ferrer-Sueta, Gerardo
    BIOCHEMISTRY, 2014, 53 (38) : 6113 - 6125
  • [37] The antioxidant peroxiredoxin AhpC1 is a key protein in Pseudomonas aeruginosa virulence and in protection against oxidative response
    Rocha, Leonardo Silva
    Silva, Beatriz Pereira
    Lopes Correia, Thiago Macedo
    da Silva, Railmara Pereira
    Meireles, Diogo de Abreu
    Pereira, Rafael
    Soares Netto, Luis Eduardo
    Meotti, Flavia Carla
    Queiroz, Raphael Ferreira
    BIOPHYSICAL REVIEWS, 2021, 13 (06) : 1392 - 1393
  • [38] Chaperone activation and client binding of a 2-cysteine peroxiredoxin
    Teixeira, Filipa
    Tse, Eric
    Castro, Helena
    Makepeace, Karl A. T.
    Meinen, Ben A.
    Borchers, Christoph H.
    Poole, Leslie B.
    Bardwell, James C.
    Tomas, Ana M.
    Southworth, Daniel R.
    Jakob, Ursula
    NATURE COMMUNICATIONS, 2019, 10 (1)
  • [39] What are the pKa values of organophosphorus compounds?
    Li, JN
    Liu, L
    Fu, Y
    Guo, QX
    TETRAHEDRON, 2006, 62 (18) : 4453 - 4462
  • [40] Progress in the prediction of pKa values in proteins
    Alexov, Emil
    Mehler, Ernest L.
    Baker, Nathan
    Baptista, Antonio M.
    Huang, Yong
    Milletti, Francesca
    Nielsen, Jens Erik
    Farrell, Damien
    Carstensen, Tommy
    Olsson, Mats H. M.
    Shen, Jana K.
    Warwicker, Jim
    Williams, Sarah
    Word, J. Michael
    PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2011, 79 (12) : 3260 - 3275