De novo sequencing and initial annotation of the Mongolian gerbil (Meriones unguiculatus) genome

被引:24
|
作者
Zorio, Diego A. R. [1 ]
Monsma, Scott [2 ]
Sanes, Dan H. [3 ]
Golding, Nace L. [4 ]
Rubel, Edwin W. [5 ]
Wang, Yuan [1 ,6 ]
机构
[1] Florida State Univ, Coll Med, Dept Biomed Sci, Tallahassee, FL 32306 USA
[2] Lucigen Corp, Middleton, WI USA
[3] NYU, Ctr Neural Sci, New York, NY 10003 USA
[4] Univ Texas Austin, Dept Neurosci, Ctr Learning & Memory, Austin, TX 78712 USA
[5] Univ Washington, Dept Otolaryngol Head & Neck Surg, Virginia Merrill Bloedel Hearing Res Ctr, Seattle, WA 98195 USA
[6] Florida State Univ, Program Neurosci, Tallahassee, FL 32306 USA
关键词
Genome assembly; Gene prediction; Fragile X syndrome; Oxytocin receptor; Hearing; Social interaction; Plasma membrane calcium ATPase; MEMBRANE CALCIUM-ATPASE; MENTAL-RETARDATION PROTEIN; INFERIOR COLLICULUS; SEX-CHROMOSOMES; SUPERIOR OLIVE; HEARING-LOSS; BRAIN; EXPRESSION; ORGANIZATION; PROJECTIONS;
D O I
10.1016/j.ygeno.2018.03.001
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
The Mongolian gerbil (Meriones unguiculatus) is a member of the rodent family that displays several features not found in mice or rats, including sensory specializations and social patterns more similar to those in humans. These features have made gerbils a valuable animal for research studies of auditory and visual processing, brain development, learning and memory, and neurological disorders. Here, we report the whole gerbil annotated genome sequence, and identify important similarities and differences to the human and mouse genomes. We further analyze the chromosomal structure of eight genes with high relevance for controlling neural signaling and demonstrate a high degree of homology between these genes in mouse and gerbil. This homology increases the likelihood that individual genes can be rapidly identified in gerbil and used for genetic manipulations. The availability of the gerbil genome provides a foundation for advancing our knowledge towards understanding evolution, behavior and neural function in mammals.
引用
收藏
页码:441 / 449
页数:9
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