On the Influence of Water on the Electronic Structure of Firefly Oxyluciferin Anions from Absorption Spectroscopy of Bare and Monohydrated Ions in Vacuo

被引:46
|
作者
Stochkel, Kristian [1 ]
Hansen, Christian Nygaard [1 ]
Houmoller, Jorgen [1 ]
Nielsen, Lisbeth Munksgaard [1 ]
Anggara, Kelvin [1 ]
Linares, Mathieu [2 ]
Norman, Patrick [2 ]
Nogueira, Fernando [3 ]
Maltsev, Oleg V. [4 ]
Hintermann, Lukas [4 ]
Nielsen, Steen Brondsted [1 ]
Naumov, Pance [5 ,6 ,7 ]
Milne, Bruce F. [3 ]
机构
[1] Aarhus Univ, Dept Phys & Astron, DK-8000 Aarhus C, Denmark
[2] Linkoping Univ, Dept Phys Chem & Biol IFM, Div Computat Phys, SE-58183 Linkoping, Sweden
[3] Univ Coimbra, Dept Phys, Ctr Computat Phys, P-3004516 Coimbra, Portugal
[4] Tech Univ Munich, Dept Chem, D-85748 Garching, Germany
[5] New York Univ Abu Dhabi, Abu Dhabi, U Arab Emirates
[6] Kyoto Univ, Inst Chem Res, Uji, Kyoto 6110011, Japan
[7] Kyoto Univ, Hakubi Ctr Adv Res, Uji, Kyoto 6110011, Japan
基金
瑞典研究理事会;
关键词
DENSITY-FUNCTIONAL THEORY; COUPLED-CLUSTER METHODS; COLOR-TUNING MECHANISM; BIOLUMINESCENCE; LUCIFERASE; LIGHT; DYNAMICS; SPECTRA; CHEMILUMINESCENCE; CHEMISTRY;
D O I
10.1021/ja311400t
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
A complete understanding of the physics underlying the varied colors of firefly bioluminescence remains elusive because it is difficult to disentangle different enzyme-lumophore interactions. Experiments on isolated ions are useful to establish a proper reference when there are no microenvironmental perturbations. Here, we use action spectroscopy to compare the absorption by the firefly oxyluciferin lumophore isolated in vacuo and complexed with a single water molecule. While the process relevant to bioluminescence within the luciferase cavity is light emission, the absorption data presented here provide a unique insight into how the electronic states of oxyluciferin are altered by microenvironmental perturbations. For the bare ion we observe broad absorption with a maximum at 548 +/- 10 nm, and addition of a water molecule is found to blue-shift the absorption by approximately 50 nm (0.23 eV). Test calculations at various levels of theory uniformly predict a blue-shift in absorption caused by a single water molecule, but are only qualitatively in agreement with experiment highlighting limitations in what can be expected from methods commonly used in studies on oxyluciferin. Combined molecular dynamics simulations and time-dependent density functional theory calculations closely reproduce the broad experimental peaks and also indicate that the preferred binding site for the water molecule is the phenolate oxygen of the anion. Predicting the effects of microenvironmental interactions on the electronic structure of the oxyluciferin anion with high accuracy is a nontrivial task for theory, and our experimental results therefore serve as important benchmarks for future calculations.
引用
收藏
页码:6485 / 6493
页数:9
相关论文
共 50 条
  • [21] Electronic Structure of Liquid Methanol and Ethanol from Polarization-Dependent Two-Photon Absorption Spectroscopy
    Bhattacharyya, Dhritiman
    Zhang, Yuyuan
    Elles, Christopher G.
    Bradforth, Stephen E.
    JOURNAL OF PHYSICAL CHEMISTRY A, 2019, 123 (27): : 5789 - 5804
  • [22] POLARIZED X-RAY ABSORPTION-SPECTROSCOPY OF METAL-IONS IN MINERALS - APPLICATIONS TO SITE GEOMETRY AND ELECTRONIC-STRUCTURE DETERMINATION
    WAYCHUNAS, GA
    BROWN, GE
    PHYSICS AND CHEMISTRY OF MINERALS, 1990, 17 (05) : 420 - 430
  • [23] Electronic structure and surface structure of Cu2S nanorods from polarization dependent X-ray absorption spectroscopy
    Dong, CL
    Mattesini, M
    Augustsson, A
    Wen, XG
    Zhang, WX
    Yang, SH
    Persson, C
    Ahuja, R
    Lüning, J
    Chang, CL
    Guo, JH
    JOURNAL OF ELECTRON SPECTROSCOPY AND RELATED PHENOMENA, 2006, 151 (01) : 64 - 70
  • [24] Proton Dynamics in In:BaZrO3: Insights on the Atomic and Electronic Structure from X-ray Absorption Spectroscopy
    Giannici, Francesco
    Longo, Alessandro
    Balerna, Antonella
    Kreuer, Klaus-Dieter
    Martorana, Antonino
    CHEMISTRY OF MATERIALS, 2009, 21 (13) : 2641 - 2649
  • [25] Electronic structure of S-nitrosothiols from sulfur K-edge X-ray absorption spectroscopy
    Martin-Diaconescu, Vlad
    Perepichka, Inna
    Bohle, D. Scott
    Kennepohl, Pierre
    CANADIAN JOURNAL OF CHEMISTRY, 2011, 89 (02) : 93 - 97
  • [26] Spectroscopy of inner-shell electronic structure from first principles: Towards enhancing the EUV absorption of photoresist materials
    Closser, Kristina
    Prendergast, David
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2017, 253
  • [27] Electronic structure of Nd1-xYxMnO3 from Mn K edge absorption spectroscopy and DFT methods
    Balasubramanian, Padmanabhan
    Yadav, Ruchika
    Nair, Harikrishnan S.
    Tsai, H. M.
    Joly, Y.
    Lee, J. F.
    Elizabeth, Suja
    Sekhar, B. R.
    Pao, C. W.
    Pong, W. F.
    SOLID STATE COMMUNICATIONS, 2014, 181 : 50 - 53
  • [28] Probing Local Electronic Structure of Amorphous MgO Thin Films by Angle Dependent Soft X-ray Absorption Spectroscopy: Impact of Heavy Ions
    Jitendra Pal Singh
    Manish Kumar
    Weon Cheol Lim
    Sanjeev Gautam
    Asokan Kandasami
    Sangsul Lee
    Keun Hwa Chae
    Transactions on Electrical and Electronic Materials, 2025, 26 (1) : 18 - 28
  • [29] Photochemical Formation and Electronic Structure of an Alkane σ-Complex from Time-Resolved Optical and X-ray Absorption Spectroscopy
    Jay, Raphael M.
    Coates, Michael R.
    Zhao, Huan
    Winghart, Marc-Oliver
    Han, Peng
    Wang, Ru-Pan
    Harich, Jessica
    Banerjee, Ambar
    Wikmark, Hampus
    Fondell, Mattis
    Nibbering, Erik T. J.
    Odelius, Michael
    Huse, Nils
    Wernet, Philippe
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2024, 146 (20) : 14000 - 14011
  • [30] ELECTRONIC-STRUCTURE FROM IRON L-EDGE SPECTROSCOPY - AN EXAMPLE OF SPIN TRANSITION EVIDENCED BY SOFT-X-RAY ABSORPTION-SPECTROSCOPY
    MOULIN, CC
    FLANK, AM
    RUDOLF, P
    CHEN, CT
    JAPANESE JOURNAL OF APPLIED PHYSICS PART 1-REGULAR PAPERS BRIEF COMMUNICATIONS & REVIEW PAPERS, 1993, 32 : 308 - 310