Structure and intrinsic disorder of the proteins of the Trypanosoma brucei editosome

被引:5
|
作者
Czerwoniec, Anna [1 ]
Kasprzak, Joanna M. [1 ,2 ]
Bytner, Patrycja [1 ]
Dobrychlop, Mateusz [1 ]
Bujnicki, Janusz M. [1 ,2 ]
机构
[1] Adam Mickiewicz Univ, Inst Mol Biol & Biotechnol, PL-61614 Poznan, Poland
[2] Int Inst Mol & Cell Biol, Lab Bioinformat & Prot Engn, PL-02109 Warsaw, Poland
基金
欧洲研究理事会;
关键词
Editosome; RNA editing; Intrinsic disorder; Protein-RNA binding; Protein Structure Prediction; GUIDE RNA MOLECULES; EDITING COMPLEX; MESSENGER-RNA; META-SERVER; KINETOPLASTID MITOCHONDRIA; TARGETING SEQUENCES; PREDICTION; MODEL; FOLD; RECOGNITION;
D O I
10.1016/j.febslet.2015.07.026
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Mitochondrial pre-mRNAs in trypanosomatids undergo RNA editing to be converted into translatable mRNAs. The reaction is characterized by the insertion and deletion of uridine residues and is catalyzed by a macromolecular protein complex called the editosome. Despite intensive research, structural information for the majority of editosome proteinsis still missing and no high resolution structure for the editosome exists. Here we present a comprehensive structural bioinformatics analysis of all proteins of the Trypanosoma brucei editosome. We specifically focus on the interplay between intrinsic order and disorder. According to computational predictions, editosome proteins involved in the basal reaction steps of the processing cycle are mostly ordered. By contrast, thirty percent of the amino acid content of the editosome is intrinsically disordered, which includes most prominently proteins with OB-fold domains. Based on the data we suggest a functional model, in which the structurally disordered domains of the complex are correlated with the RNA binding and RNA unfolding activity of the T. brucei editosome. (C) 2015 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved.
引用
收藏
页码:2603 / 2610
页数:8
相关论文
共 50 条
  • [31] Crystal structure of a Trypanosoma brucei metacaspase
    McLuskey, Karen
    Rudolf, Jana
    Proto, William R.
    Isaacs, Neil W.
    Coombs, Graham H.
    Moss, Catherine X.
    Mottram, Jeremy C.
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2012, 109 (19) : 7469 - 7474
  • [32] Naphthalene-based RNA Editing Inhibitor Blocks RNA Editing Activities and Editosome Assembly in Trypanosoma brucei
    Moshiri, Houtan
    Acoca, Stephane
    Kala, Smriti
    Najafabadi, Hamed Shateri
    Hogues, Herve
    Purisima, Enrico
    Salavati, Reza
    JOURNAL OF BIOLOGICAL CHEMISTRY, 2011, 286 (16) : 14178 - 14189
  • [33] Editosome RNase III domain interactions are essential for editing and differ between life cycle stages in Trypanosoma brucei
    Mcdermott, Suzanne M.
    Carnes, Jason
    Stuart, Kenneth
    RNA, 2019, 25 (09) : 1150 - 1163
  • [34] Identification of 30 transition fibre proteins in Trypanosoma brucei reveals a complex and dynamic structure
    Ahmed, Manu
    Wheeler, Richard
    Tyc, Jiri
    Shafiq, Shahaan
    Sunter, Jack
    Vaughan, Sue
    JOURNAL OF CELL SCIENCE, 2024, 137 (10)
  • [35] Structure-based design of inhibitors of key proteins in Trypanosoma brucei and Plasmodium falciparum
    Verlinde, C
    Bernstein, B
    Kim, HD
    Chudzik, D
    Baca, A
    Wooden, J
    Li, RB
    Choe, JW
    Bressi, J
    Gelb, M
    Blackburn, M
    Fan, E
    Hol, WGJ
    NAUNYN-SCHMIEDEBERGS ARCHIVES OF PHARMACOLOGY, 1998, 358 (01) : R27 - R27
  • [36] STRUCTURE AND FUNCTION OF GPI-ANCHORED SURFACE-PROTEINS OF TRYPANOSOMA-BRUCEI
    OVERATH, P
    STEVERDING, D
    CHAUDHRI, M
    STIERHOF, YD
    ZIEGELBAUER, K
    BRAZILIAN JOURNAL OF MEDICAL AND BIOLOGICAL RESEARCH, 1994, 27 (02) : 343 - 347
  • [37] THE GENES AND PROTEINS OF THE PARAFLAGELLAR ROD OF TRYPANOSOMA-BRUCEI
    SCHLAEPPI, K
    SEEBECK, T
    TROPICAL MEDICINE AND PARASITOLOGY, 1987, 38 (03): : 271 - 272
  • [38] Biogenesis of mitochondrial metabolite carrier proteins in Trypanosoma brucei
    Smith, Joseph
    Chaudhuri, Minu
    FASEB JOURNAL, 2014, 28 (01):
  • [39] bHLH-PAS Proteins: Their Structure and Intrinsic Disorder
    Kolonko, Marta
    Greb-Markiewicz, Beata
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2019, 20 (15)
  • [40] A rapid approach for in locus overexpression of Trypanosoma brucei proteins
    Vachova, Hana
    Alquicer, Glenda
    Sedinova, Miroslava
    Sachova, Jana
    Hradilova, Miluse
    Varga, Vladimir
    MOLECULAR AND BIOCHEMICAL PARASITOLOGY, 2020, 239