"SP-G", a Putative New Surfactant Protein - Tissue Localization and 3D Structure

被引:25
|
作者
Rausch, Felix [1 ]
Schicht, Martin [2 ]
Paulsen, Friedrich [2 ]
Ngueya, Ivan [2 ]
Braeuer, Lars [2 ]
Brandt, Wolfgang [1 ]
机构
[1] Leibniz Inst Plant Biochem, Dept Bioorgan Chem, Halle, Germany
[2] Univ Erlangen Nurnberg, Inst Anat, Dept 2, D-91054 Erlangen, Germany
来源
PLOS ONE | 2012年 / 7卷 / 10期
关键词
MOLECULAR-DYNAMICS SIMULATIONS; LINEAR CONSTRAINT SOLVER; PARTICLE MESH EWALD; PULMONARY SURFACTANT; FORCE-FIELD; NASAL EPITHELIUM; EUSTACHIAN-TUBE; HOST-DEFENSE; I-TASSER; SP-B;
D O I
10.1371/journal.pone.0047789
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Surfactant proteins (SP) are well known from human lung. These proteins assist the formation of a monolayer of surface-active phospholipids at the liquid-air interface of the alveolar lining, play a major role in lowering the surface tension of interfaces, and have functions in innate and adaptive immune defense. During recent years it became obvious that SPs are also part of other tissues and fluids such as tear fluid, gingiva, saliva, the nasolacrimal system, and kidney. Recently, a putative new surfactant protein (SFTA2 or SP-G) was identified, which has no sequence or structural identity to the already know surfactant proteins. In this work, computational chemistry and molecular-biological methods were combined to localize and characterize SP-G. With the help of a protein structure model, specific antibodies were obtained which allowed the detection of SP-G not only on mRNA but also on protein level. The localization of this protein in different human tissues, sequence based prediction tools for posttranslational modifications and molecular dynamic simulations reveal that SP-G has physicochemical properties similar to the already known surfactant proteins B and C. This includes also the possibility of interactions with lipid systems and with that, a potential surface-regulatory feature of SP-G. In conclusion, the results indicate SP-G as a new surfactant protein which represents an until now unknown surfactant protein class.
引用
收藏
页数:13
相关论文
共 50 条
  • [41] Protein structure from the essential amino acids to the 3D structure
    Atta, Diaa
    Mahmoud, Abd Elaziz
    Fakhry, Ahmed
    BIOINTERFACE RESEARCH IN APPLIED CHEMISTRY, 2019, 9 (01): : 3817 - 3824
  • [42] Differential expression of Homeobox C11 protein in water buffalo Bubalus bubalis and its putative 3D structure
    Sharma, Monal
    Rawal, Leena
    Panwar, Deepak
    Sehgal, Neeta
    Ali, Sher
    BMC GENOMICS, 2014, 15
  • [43] Differential expression of Homeobox C11 protein in water buffalo Bubalus bubalis and its putative 3D structure
    Monal Sharma
    Leena Rawal
    Deepak Panwar
    Neeta Sehgal
    Sher Ali
    BMC Genomics, 15
  • [44] Motif3D: relating protein sequence motifs to 3D structure
    Gaulton, A
    Attwood, TK
    NUCLEIC ACIDS RESEARCH, 2003, 31 (13) : 3333 - 3336
  • [45] Protein Peeling 3D: new tools for analyzing protein structures
    Gelly, Jean-Christophe
    de Brevern, Alexandre G.
    BIOINFORMATICS, 2011, 27 (01) : 132 - 133
  • [46] New vistas in GPCR 3D structure prediction
    Rayan, Anwar
    JOURNAL OF MOLECULAR MODELING, 2010, 16 (02) : 183 - 191
  • [47] New vistas in GPCR 3D structure prediction
    Anwar Rayan
    Journal of Molecular Modeling, 2010, 16 : 183 - 191
  • [48] A new hybrid data structure for 3D GIS
    Wu Huixin
    Xue Huifeng
    ICICIC 2006: FIRST INTERNATIONAL CONFERENCE ON INNOVATIVE COMPUTING, INFORMATION AND CONTROL, VOL 1, PROCEEDINGS, 2006, : 162 - +
  • [49] Prolamins' 3D structure: A new insight into protein modeling using the language of numbers and shapes
    Hajjari, Mohammad Mahdi
    Sharif, Niloufar
    FOOD HYDROCOLLOIDS, 2024, 154
  • [50] A new integrated data structure for 3D GIS
    Wu Hui-xin
    Xue Hui-feng
    2006 9TH INTERNATIONAL CONFERENCE ON CONTROL, AUTOMATION, ROBOTICS AND VISION, VOLS 1- 5, 2006, : 59 - +