Comprehensive identification of mutational cancer driver genes across 12 tumor types

被引:11
|
作者
Tamborero, David [1 ]
Gonzalez-Perez, Abel [1 ]
Perez-Llamas, Christian [1 ]
Deu-Pons, Jordi [1 ]
Kandoth, Cyriac [2 ]
Reimand, Jueri [3 ]
Lawrence, Michael S. [4 ,5 ]
Getz, Gad [4 ,5 ]
Bader, Gary D. [3 ]
Ding, Li [2 ,6 ,7 ,8 ]
Lopez-Bigas, Nuria [1 ,9 ]
机构
[1] Univ Pompeu Fabra, Dept Expt & Hlth Sci, Res Unit Biomed Informat, Barcelona, Spain
[2] Washington Univ, Genome Inst, St Louis, MO 63108 USA
[3] Univ Toronto, Donnelly Ctr, Toronto, ON, Canada
[4] MIT, Broad Inst, Cambridge, MA 02142 USA
[5] Harvard Univ, Cambridge, MA 02142 USA
[6] Washington Univ, Dept Genet, Washington, DC USA
[7] Washington Univ, Dept Med, Washington, DC USA
[8] Washington Univ, Siteman Canc Ctr, Washington, DC USA
[9] Catalan Inst Res & Adv Studies ICREA, Barcelona, Spain
来源
SCIENTIFIC REPORTS | 2013年 / 3卷
基金
美国国家卫生研究院;
关键词
CATALYTIC SUBUNIT; DOWN-REGULATION; ACTIVATION; KINASE; FOXA1; EXPRESSION; P110-BETA; LANDSCAPE; PROTEINS;
D O I
10.1038/srep02650
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
With the ability to fully sequence tumor genomes/exomes, the quest for cancer driver genes can now be undertaken in an unbiased manner. However, obtaining a complete catalog of cancer genes is difficult due to the heterogeneous molecular nature of the disease and the limitations of available computational methods. Here we show that the combination of complementary methods allows identifying a comprehensive and reliable list of cancer driver genes. We provide a list of 291 high-confidence cancer driver genes acting on 3,205 tumors from 12 different cancer types. Among those genes, some have not been previously identified as cancer drivers and 16 have clear preference to sustain mutations in one specific tumor type. The novel driver candidates complement our current picture of the emergence of these diseases. In summary, the catalog of driver genes and the methodology presented here open new avenues to better understand the mechanisms of tumorigenesis.
引用
收藏
页数:9
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