GenomicLand: Software for genome-wide association studies and genomic prediction

被引：11
|
作者：
Azevedo, Camila Ferreira [1 ]
Nascimento, Moyses [1 ]
Fontes, Vitor Cunha [2 ]
Fonseca e Silva, Fabyano [3 ]
Vilela de Resende, Marcos Deon [4 ]
Cruz, Cosme Damiao [5 ]
机构：
[1] Univ Fed Vicosa, Dept Estat, Lab Inteligencia Comp, Av PH Rolfs S-N,Campus Univ, BR-36570900 Vicosa, MG, Brazil
[2] Univ Fed Vicosa, Grp Pesquisa Interacao Atmosfera Biosfera, Dept Engn Agr, Vicosa, MG, Brazil
[3] Univ Fed Vicosa, Dept Zootecnia, Vicosa, MG, Brazil
[4] Univ Fed Vicosa, Embrapa Florestas, Dept Engn Florestal, Vicosa, MG, Brazil
[5] Univ Fed Vicosa, Dept Biol Geral, Lab Bioinformat, Vicosa, MG, Brazil
来源：
ACTA SCIENTIARUM-AGRONOMY | 2019年 / 41卷
关键词：
statistical analysis; genomic analysis; molecular markers; biometrics; CARCASS TRAITS; SELECTION; MARKERS; MODELS;
D O I：
10.4025/actasciagron.v41i1.45361
中图分类号：
S3 [农学（农艺学）];
学科分类号：
0901 ;
摘要：
GenomicLand is free software intended for prediction and genomic association studies based on the R software. This computational tool has an intuitive interface and supports large genomic databases, without requiring the user to use the command line. GenomicLand is available in English, can be downloaded from the Internet (https://licaeufv.wordpress.com/), and requires the Windows or Linux operating system. The software includes statistical procedures based on mixed models, Bayesian inference, dimensionality reduction and artificial intelligence. Examples of data files that can be processed by GenomicLand are available. The examples are useful to learn about the operation of the modules and statistical procedures.
引用
收藏
页数：7
相关论文
共 50 条
  • [31] Genome-wide association mapping and genomic prediction for CBSD resistance in Manihot esculenta
    Kayondo, Siraj Ismail
    Del Carpio, Dunia Pino
    Lozano, Roberto
    Ozimati, Alfred
    Wolfe, Marnin
    Baguma, Yona
    Gracen, Vernon
    Offei, Samuel
    Ferguson, Morag
    Kawuki, Robert
    Jannink, Jean-Luc
    SCIENTIFIC REPORTS, 2018, 8
  • [32] A genome-wide association study and genomic prediction for Phakopsora pachyrhizi resistance in soybean
    Xiong, Haizheng
    Chen, Yilin
    Pan, Yong-Bao
    Wang, Jinshe
    Lu, Weiguo
    Shi, Ainong
    FRONTIERS IN PLANT SCIENCE, 2023, 14
  • [33] Genome-wide association study and genomic prediction for resistance to brown planthopper in rice
    Zhou, Cong
    Jiang, Weihua
    Guo, Jianping
    Zhu, Lili
    Liu, Lijiang
    Liu, Shengyi
    Chen, Rongzhi
    Du, Bo
    Huang, Jin
    FRONTIERS IN PLANT SCIENCE, 2024, 15
  • [34] Genome-Wide Association Study and Genomic Prediction of Soybean Mosaic Virus Resistance
    He, Di
    Wu, Xintong
    Liu, Zhi
    Yang, Qing
    Shi, Xiaolei
    Song, Qijian
    Shi, Ainong
    Li, Dexiao
    Yan, Long
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2025, 26 (05)
  • [35] A Genome-wide Association Study and Genomic Prediction for Fiber and Sucrose Contents in Sugarcane
    Xiong, Haizheng
    Chen, Yilin
    Shi, Ainong
    Pan, Yong-Bao
    HORTSCIENCE, 2022, 57 (09) : S12 - S13
  • [36] Meta-analysis of genome-wide association from genomic prediction models
    Bernal Rubio, Y. L.
    Gualdron Duarte, J. L.
    Bates, R. O.
    Ernst, C. W.
    Nonneman, D.
    Rohrer, G. A.
    King, A.
    Shackelford, S. D.
    Wheeler, T. L.
    Cantet, R. J. C.
    Steibel, J. P.
    ANIMAL GENETICS, 2016, 47 (01) : 36 - 48
  • [37] Genome-wide association and genomic prediction for scrotal circumference in Hereford and Braford bulls
    Ferreira, Carlos E. R.
    Campos, Gabriel S.
    Schmidt, Patricia, I
    Sollero, Bruna P.
    Goularte, Karina L.
    Corcini, Carine D.
    Gasperin, Bernardo G.
    Lucia, Thomaz
    Boligon, Arione A.
    Cardoso, Fernando F.
    THERIOGENOLOGY, 2021, 172 : 268 - 280
  • [38] Genome-wide association mapping and genomic prediction for CBSD resistance in Manihot esculenta
    Siraj Ismail Kayondo
    Dunia Pino Del Carpio
    Roberto Lozano
    Alfred Ozimati
    Marnin Wolfe
    Yona Baguma
    Vernon Gracen
    Samuel Offei
    Morag Ferguson
    Robert Kawuki
    Jean-Luc Jannink
    Scientific Reports, 8
  • [39] GENOME-WIDE ASSOCIATION STUDIES Validating, augmenting and refining genome-wide association signals
    Ioannidis, John P. A.
    Thomas, Gilles
    Daly, Mark J.
    NATURE REVIEWS GENETICS, 2009, 10 (05) : 318 - 329
  • [40] Pulmonary Function: From Genome-Wide Association Studies to Genome-Wide Interaction Studies
    Christiani, David C.
    AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 2019, 199 (05) : 557 - 559
12345