Phylogenomic analysis of the genus Rosenbergiella and description of Rosenbergiella gaditana sp. nov., Rosenbergiella metrosideri sp. nov., Rosenbergiella epipactidis subsp. epipactidis subsp. nov., Rosenbergiella epipactidis subsp. californiensis subsp. nov., Rosenbergiella epipactidis subsp. japonicus subsp. nov., Rosenbergiella nectarea subsp. nectarea subsp. nov. and Rosenbergiella nectarea subsp. apis subsp. nov., isolated from floral nectar and insects

被引:4
|
作者
Alvarez-Perez, Sergio [1 ,2 ]
De Vega, Clara [3 ]
Vanoirbeek, Kristof [4 ]
Tsuji, Kaoru [5 ]
Jacquemyn, Hans [6 ]
Fukami, Tadashi [7 ]
Michiels, Chris [4 ]
Lievens, Bart [1 ]
机构
[1] Katholieke Univ Leuven, Dept Microbial & Mol Syst, Lab Proc Microbial Ecol & Bioinspirat Management, B-3001 Heverlee, Belgium
[2] Univ Complutense Madrid, Dept Anim Hlth, Madrid 28040, Spain
[3] Univ Seville, Dept Biol Vegetal & Ecol, Seville 41012, Spain
[4] Katholieke Univ Leuven, Dept Microbial & Mol Syst, Lab Food Microbiol, B-3001 Heverlee, Belgium
[5] Kobe Univ, Grad Sch Sci, Dept Biol, Hyogo 6578501, Japan
[6] Katholieke Univ Leuven, Dept Biol, Plant Populat & Conservat Biol, B-3001 Heverlee, Belgium
[7] Stanford Univ, Dept Biol, Stanford, CA 94305 USA
基金
美国国家科学基金会;
关键词
floral nectar; insect; phylogenomics; Rosenbergiella; taxonomy; FAMILY ENTEROBACTERIACEAE; MODEL SELECTION; QUALITY; DIVERSITY;
D O I
10.1099/ijsem.0.005777
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
The genus Rosenbergiella is one of the most frequent bacterial inhabitants of flowers and a usual member of the insect microbi-ota worldwide. To date, there is only one publicly available Rosenbergiella genome, corresponding to the type strain of Rosenber-giella nectarea (8N4T), which precludes a detailed analysis of intra- genus phylogenetic relationships. In this study, we obtained draft genomes of the type strains of the other Rosenbergiella species validly published to date (R. australiborealis, R. collisarenosi and R. epipactidis) and 23 additional isolates of flower and insect origin. Isolate S61T, retrieved from the nectar of an Antirrhi-num sp. flower collected in southern Spain, displayed low average nucleotide identity (ANI) and in silico DNA-DNA hybridization (isDDH) values when compared with other Rosenbergiella members (<= 86.5 and <= 29.8 %, respectively). Similarly, isolate JB07T, which was obtained from the floral nectar of Metrosideros polymorpha plants in Hawaii (USA) had <= 95.7 % ANI and <= 64.1 % isDDH with other Rosenbergiella isolates. Therefore, our results support the description of two new Rosenbergiella species for which we propose the names Rosenbergiella gaditana sp. nov. (type strain: S61T=NCCB 100789T=DSM 111181T) and Rosenber-giella metrosideri sp. nov. (JB07T=NCCB 100888T=LMG 32616T). Additionally, some R. epipactidis and R. nectarea isolates showed isDDH values<79 % with other conspecific isolates, which suggests that these species include subspecies for which we propose the names Rosenbergiella epipactidis subsp. epipactidis subsp. nov. (S256T=CECT 8502T=LMG 27956T), Rosenbergiella epipactidis subsp. californiensis subsp. nov. (FR72T=NCCB 100898T=LMG 32786T), Rosenbergiella epipactidis subsp. japonicus subsp. nov. (K24T=NCCB 100924T=LMG 32785T), Rosenbergiella nectarea subsp. nectarea subsp. nov. (8N4T = DSM 24150T = LMG 26121T) and Rosenbergiella nectarea subsp. apis subsp. nov. (B1AT=NCCB 100810T= DSM 111763T), respectively. Finally, we present the first phylogenomic analysis of the genus Rosenbergiella and update the formal description of the species R. australiborealis, R. collisarenosi, R. epipactidis and R. nectarea based on new genomic and phenotypic information.
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页数:19
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