Green-Kubo expressions for transport coefficients from dissipative particle dynamics simulations revisited

被引:1
|
作者
Malaspina, D. C. [1 ]
Lisal, M. [2 ,3 ]
Larentzos, J. P. [4 ]
Brennan, J. K. [4 ]
Mackie, A. D. [1 ]
Avalos, J. Bonet [1 ]
机构
[1] Univ Rovira i Virgili, Dept Engn Quim, ETSEQ, Tarragona 43007, Spain
[2] Czech Acad Sci, Inst Chem Proc Fundamentals, Res Grp Mol & Mesoscop Modelling, Prague 16500, Czech Republic
[3] Jan Evangelista Purkyne Univ Usti Nad Labem, Fac Sci, Dept Phys, Usti Nad Labem 40096, Czech Republic
[4] US Army Combat Capabil Dev Command DEVCOM, Army Res Lab, Aberdeen Proving Ground, MD 21005 USA
关键词
ENERGY-CONSERVATION;
D O I
10.1039/d3cp03791f
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
This article addresses the debate about the correct application of Green-Kubo expressions for transport coefficients from dissipative particle dynamics simulations. We demonstrate that the Green-Kubo expressions are valid provided that (i) the dynamic model conserves the physical property, whose transport is studied, and (ii) the fluctuations satisfy detailed balance. As a result, the traditional expressions used in molecular dynamics can also be applied to dissipative particle dynamics simulations. However, taking the calculation of the shear viscosity as a paradigmatic example, a random contribution, whose strength scales as 1/delta t1/2, with delta t the time-step, can cause difficulties if the stress tensor is not separated into the different contributions. We compare our expression to that of Ernst and Brito (M. H. Ernst and R. Brito, Europhys. Lett., 2006, 73, 183-189), which arises from a diametrically different perspective. We demonstrate that the two expressions are completely equivalent and find exactly the same result both analytically and numerically. We show that the differences are not due to the lack of time-reversibility but instead from a pre-averaging of the random contributions. Despite the overall validity of Green-Kubo expressions, we find that the Einstein-Helfand relations (D. C. Malaspina et al. Phys. Chem. Chem. Phys., 2023, 25, 12025-12040) do not suffer from the need to decompose the stress tensor and can readily be used with a high degree of accuracy. Consequently, Einstein-Helfand relations should be seen as the preferred method to calculate transport coefficients from dissipative particle dynamics simulations. This article addresses the debate about the correct application of Green-Kubo expressions for transport coefficients from dissipative particle dynamics simulations.
引用
收藏
页码:1328 / 1339
页数:12
相关论文
共 50 条
  • [21] Phonon transport in amorphous carbon using Green-Kubo modal analysis
    Lv, Wei
    Henry, Asegun
    [J]. APPLIED PHYSICS LETTERS, 2016, 108 (18)
  • [22] Green-Kubo assessments of thermal transport in nanocolloids based on interfacial effects
    Akiner, Tolga
    Kocer, Emir
    Mason, Jeremy K.
    Erturk, Hakan
    [J]. MATERIALS TODAY COMMUNICATIONS, 2019, 20
  • [23] Non-local viscosity from the Green-Kubo formula
    Duque-Zumajo, D.
    de la Torre, J. A.
    Espanol, Pep
    [J]. JOURNAL OF CHEMICAL PHYSICS, 2020, 152 (17):
  • [24] Phonon Hall thermal conductivity from the Green-Kubo formula
    Wang, Jian-Sheng
    Zhang, Lifa
    [J]. PHYSICAL REVIEW B, 2009, 80 (01):
  • [25] Transport coefficients of dissipative particle dynamics with finite time step
    Noguchi, H.
    Gompper, G.
    [J]. EPL, 2007, 79 (03)
  • [26] Determination of macroscopic transport coefficients of a dissipative particle dynamics solvent
    Azarnykh, Dmitrii
    Litvinov, Sergey
    Bian, Xin
    Adams, Nikolaus A.
    [J]. PHYSICAL REVIEW E, 2016, 93 (01)
  • [27] Green-Kubo formula derived from large deviation statistics
    Shibata, H
    [J]. PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, 2002, 309 (3-4) : 268 - 274
  • [28] Surface viscosity of liquid interfaces from Green-Kubo relations
    Jedlovszky, Pal
    Sega, Marcello
    [J]. JOURNAL OF CHEMICAL PHYSICS, 2024, 160 (20):
  • [29] Transport theory for collective modes and green-kubo formalism for moderately dense gases
    Petrosky, T
    [J]. DYNAMICAL SYSTEMS AND IRREVERSIBILITY: PROCEEDINGS OF THE XXI SOLVAY CONFERENCE ON PHYSICS, 2002, 122 : 129 - 159
  • [30] Systematic errors in transport calculations of shear viscosity using the Green-Kubo formalism
    Rose, J. B.
    Torres-Rincon, J. M.
    Oliinychenko, D.
    Schaefer, A.
    Petersen, H.
    [J]. FAIRNESS 2017: FAIR NEXT GENERATION SCIENTISTS 2017, 2018, 1024