The genome of a globally invasive passerine, the common myna, Acridotheres tristis

被引:0
|
作者
Stuart, Katarina C. [1 ,2 ]
Johnson, Rebecca N. [3 ]
Major, Richard E. [4 ]
Atsawawaranunt, Kamolphat [1 ]
Ewart, Kyle M. [4 ,5 ]
Rollins, Lee A.
Santure, Anna W. [1 ]
Whibley, Annabel [1 ]
机构
[1] Univ Auckland, Sch Biol Sci, Auckland, New Zealand
[2] Univ New South Wales, Evolut & Ecol Res Ctr, Sch Biol Earth & Environm Sci, Sydney, Australia
[3] Smithsonian Inst, Natl Museum Nat Hist, Washington, DC USA
[4] Australian Museum, Australian Museum Res Inst, Sydney, Australia
[5] Univ Sydney, Sch Life & Environm Sci, Sydney, Australia
关键词
Sturnidae; genome assembly; methylation; transposable elements; demographic history; RAPID EVOLUTION; ANNOTATION; ALIGNMENT; TRAITS; SPREAD;
D O I
10.1093/dnares/dsae005
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
In an era of global climate change, biodiversity conservation is receiving increased attention. Conservation efforts are greatly aided by genetic tools and approaches, which seek to understand patterns of genetic diversity and how they impact species health and their ability to persist under future climate regimes. Invasive species offer vital model systems in which to investigate questions regarding adaptive potential, with a particular focus on how changes in genetic diversity and effective population size interact with novel selection regimes. The common myna (Acridotheres tristis) is a globally invasive passerine and is an excellent model species for research both into the persistence of low-diversity populations and the mechanisms of biological invasion. To underpin research on the invasion genetics of this species, we present the genome assembly of the common myna. We describe the genomic landscape of this species, including genome wide allelic diversity, methylation, repeats, and recombination rate, as well as an examination of gene family evolution. Finally, we use demographic analysis to identify that some native regions underwent a dramatic population increase between the two most recent periods of glaciation, and reveal artefactual impacts of genetic bottlenecks on demographic analysis.
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页数:16
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