Genome-Wide Identification of GATA Family Genes in Phoebe bournei and Their Transcriptional Analysis under Abiotic Stresses

被引:3
|
作者
Yin, Ziyuan [1 ]
Liao, Wenhai [1 ,2 ]
Li, Jingshu [1 ,2 ]
Pan, Jinxi [1 ]
Yang, Sijia [1 ]
Chen, Shipin [1 ]
Cao, Shijiang [1 ,2 ]
机构
[1] Fujian Agr & Forestry Univ, Coll Forestry, Fuzhou 350002, Peoples R China
[2] Fujian Agr & Forestry Univ, Univ Key Lab Forest Stress Physiol Ecol & Mol Biol, Coll Forestry, Fuzhou 350002, Peoples R China
关键词
GATA family genes; Phoebe bournei; expression patterns; evolution; abiotic stress; MULTIPLE SEQUENCE ALIGNMENT; LOW-TEMPERATURE; DNA-BINDING; COLD-ACCLIMATION; FACTORS GNC; ARABIDOPSIS; TOLERANCE; EXPRESSION; EVOLUTION; PROTEINS;
D O I
10.3390/ijms241210342
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
GATA transcription factors are crucial proteins in regulating transcription and are characterized by a type-IV zinc finger DNA-binding domain. They play a significant role in the growth and development of plants. While the GATA family gene has been identified in several plant species, it has not yet been reported in Phoebe bournei. In this study, 22 GATA family genes were identified from the P. bournei genome, and their physicochemical properties, chromosomal distribution, subcellular localization, phylogenetic tree, conserved motif, gene structure, cis-regulatory elements in promoters, and expression in plant tissues were analyzed. Phylogenetic analysis showed that the PbGATAs were clearly divided into four subfamilies. They are unequally distributed across 11 out of 12 chromosomes, except chromosome 9. Promoter cis-elements are mostly involved in environmental stress and hormonal regulation. Further studies showed that PbGATA11 was localized to chloroplasts and expressed in five tissues, including the root bark, root xylem, stem bark, stem xylem, and leaf, which means that PbGATA11 may have a potential role in the regulation of chlorophyll synthesis. Finally, the expression profiles of four representative genes, PbGATA5, PbGATA12, PbGATA16, and PbGATA22, under drought, salinity, and temperature stress, were detected by qRT-PCR. The results showed that PbGATA5, PbGATA22, and PbGATA16 were significantly expressed under drought stress. PbGATA12 and PbGATA22 were significantly expressed after 8 h of low-temperature stress at 10 & DEG;C. This study concludes that the growth and development of the PbGATA family gene in P. bournei in coping with adversity stress are crucial. This study provides new ideas for studying the evolution of GATAs, provides useful information for future functional analysis of PbGATA genes, and helps better understand the abiotic stress response of P. bournei.
引用
收藏
页数:18
相关论文
共 50 条
  • [31] Genome-Wide Identification and Expression Analysis of theDofGene Family inMedicago sativaL. Under Various Abiotic Stresses
    Cao, Bo
    Cui, Yue
    Lou, Keke
    Luo, Dong
    Liu, Zhipeng
    Zhou, Qiang
    [J]. DNA AND CELL BIOLOGY, 2020, 39 (11) : 1976 - 1989
  • [32] Genome-wide identification of WRKY family genes and their response to abiotic stresses in tea plant (Camellia sinensis)
    Pengjie Wang
    Chuan Yue
    Di Chen
    Yucheng Zheng
    Qian Zhang
    Jiangfan Yang
    Naixing Ye
    [J]. Genes & Genomics, 2019, 41 : 17 - 33
  • [33] Genome-Wide Identification and Expression Analysis of GATA Family Genes in Dimocarpus longan Lour
    Zheng, Kehui
    Lu, Jiayue
    He, Xinyu
    Lan, Shuoxian
    Zhai, Tingkai
    Cao, Shijiang
    Lin, Yuling
    [J]. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2024, 25 (02)
  • [34] Genome-wide identification of WRKY family genes and their response to abiotic stresses in tea plant (Camellia sinensis)
    Wang, Pengjie
    Yue, Chuan
    Chen, Di
    Zheng, Yucheng
    Zhang, Qian
    Yang, Jiangfan
    Ye, Naixing
    [J]. GENES & GENOMICS, 2019, 41 (01) : 17 - 33
  • [35] Genome-wide identification of MAPK family genes and their response to abiotic stresses in tea plant (Camellia sinensis)
    Liu, Xinhao
    Zhao, Min
    Gu, Caihua
    Jiang, Haodong
    Sun, Junyan
    Li, Jie
    [J]. OPEN LIFE SCIENCES, 2022, 17 (01): : 1064 - 1074
  • [36] Genome-wide identification and expression analysis of tomato glycoside hydrolase family 1 β-glucosidase genes in response to abiotic stresses
    Wei, Jinpeng
    Chen, Qiusen
    Lin, Jiaxin
    Chen, Fengqiong
    Chen, Runan
    Liu, Hanlin
    Chu, Peiyu
    Lu, Zhiyong
    Li, Shaozhe
    Yu, Gaobo
    [J]. BIOTECHNOLOGY & BIOTECHNOLOGICAL EQUIPMENT, 2022, 36 (01) : 268 - 280
  • [37] Genome-wide identification of SHMT family genes in alfalfa (Medicago sativa) and its functional analyses under various abiotic stresses
    Gao, Rong
    Chen, Lijuan
    Chen, Fenqi
    Ma, Huiling
    [J]. BMC GENOMICS, 2024, 25 (01):
  • [38] Genome-wide identification and characterization of the lettuce GASA family in response to abiotic stresses
    Sun Ho Lee
    Jin Seok Yoon
    Woo Joo Jung
    Dae Yeon Kim
    Yong Weon Seo
    [J]. BMC Plant Biology, 23
  • [39] Genome-wide identification and characterization of the lettuce GASA family in response to abiotic stresses
    Lee, Sun Ho
    Yoon, Jin Seok
    Jung, Woo Joo
    Kim, Dae Yeon
    Seo, Yong Weon
    [J]. BMC PLANT BIOLOGY, 2023, 23 (01)
  • [40] Genome-wide analysis of the Saccharina japonica sulfotransferase genes and their transcriptional profiles during whole developmental periods and under abiotic stresses
    Chang Lu
    Zhanru Shao
    Pengyan Zhang
    Delin Duan
    [J]. BMC Plant Biology, 20