The Action of Chemical Denaturants: From Globular to Intrinsically Disordered Proteins

被引:4
|
作者
Paladino, Antonella [1 ]
Vitagliano, Luigi [1 ]
Graziano, Giuseppe [2 ]
机构
[1] CNR, Inst Biostruct & Bioimaging, Via Pietro Castellino 111, I-80131 Naples, Italy
[2] Univ Sannio, Dept Sci & Technol, Via Francesco Sanctis snc, I-82100 Benevento, Italy
来源
BIOLOGY-BASEL | 2023年 / 12卷 / 05期
关键词
denaturants; urea; guanidinium; solvent; conformational ensemble; intrinsically disordered proteins; AQUEOUS GUANIDINIUM CHLORIDE; SINGLE-MOLECULE FRET; AMYLOID FIBRIL FORMATION; FORCE-FIELD; STRUCTURAL-CHARACTERIZATION; ALIPHATIC-HYDROCARBONS; ALPHA-SYNUCLEIN; WATER-STRUCTURE; UREA; SPECTROSCOPY;
D O I
10.3390/biology12050754
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Proteins perform their many functions by adopting either a minimal number of strictly similar conformations, the native state, or a vast ensemble of highly flexible conformations. In both cases, their structural features are highly influenced by the chemical environment. Even though a plethora of experimental studies have demonstrated the impact of chemical denaturants on protein structure, the molecular mechanism underlying their action is still debated. In the present review, after a brief recapitulation of the main experimental data on protein denaturants, we survey both classical and more recent interpretations of the molecular basis of their action. In particular, we highlight the differences and similarities of the impact that denaturants have on different structural classes of proteins, i.e., globular, intrinsically disordered (IDP), and amyloid-like assemblies. Particular attention has been given to the IDPs, as recent studies are unraveling their fundamental importance in many physiological processes. The role that computation techniques are expected to play in the near future is illustrated.
引用
收藏
页数:18
相关论文
共 50 条
  • [11] Intrinsically Disordered Proteins and Intrinsically Disordered Protein Regions
    Oldfield, Christopher J.
    Dunker, A. Keith
    ANNUAL REVIEW OF BIOCHEMISTRY, VOL 83, 2014, 83 : 553 - 584
  • [12] Intrinsically disordered proteins
    Dunker, A. K.
    Uversky, V. N.
    Oldfield, C. J.
    Mohan, A.
    Cheng, Y.
    Zaidi, S.
    Romero, P. R.
    Xie, H.
    Obradovic, Z.
    BIOPHYSICAL JOURNAL, 2007, : 1A - 1A
  • [13] Constructing Structure Ensembles of Intrinsically Disordered Proteins from Chemical Shift Data
    Gong, Huichao
    Zhang, Sai
    Wang, Jiangdian
    Gong, Haipeng
    Zeng, Jianyang
    JOURNAL OF COMPUTATIONAL BIOLOGY, 2016, 23 (05) : 300 - 310
  • [14] Constructing Structure Ensembles of Intrinsically Disordered Proteins from Chemical Shift Data
    Gong, Huichao
    Zhang, Sai
    Wang, Jiangdian
    Gong, Haipeng
    Zeng, Jianyang
    RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY (RECOMB 2015), 2015, 9029 : 108 - 121
  • [15] Intrinsically disordered proteins
    Babu, M. Madan
    MOLECULAR BIOSYSTEMS, 2012, 8 (01) : 21 - 21
  • [16] Intrinsically disordered proteins
    Tompa, Peter
    Han, Kyou-Hoon
    PHYSICS TODAY, 2012, 65 (08) : 64 - 65
  • [17] Intrinsically disordered proteins
    Herlekar, Ipsita
    CURRENT SCIENCE, 2018, 114 (06): : 1156 - 1156
  • [18] Intrinsically disordered proteins: lessons from colicins
    Hecht, Oliver
    Macdonald, Colin
    Moore, Geoffrey R.
    BIOCHEMICAL SOCIETY TRANSACTIONS, 2012, 40 : 1534 - 1538
  • [19] From Immunogenic Peptides to Intrinsically Disordered Proteins
    Dyson, H. Jane
    Wright, Peter E.
    ISRAEL JOURNAL OF CHEMISTRY, 2023, 63 (10-11)
  • [20] Self-assembly of globular proteins with intrinsically disordered protein polyelectrolytes and block copolymers
    Horn, Justin M.
    Zhu, Yuncan
    Ahn, So Yeon
    Obermeyer, Allie C.
    SOFT MATTER, 2022, 18 (31) : 5759 - 5769