Predictive power of non-identifiable models

被引:1
|
作者
Grabowski, Frederic [1 ]
Naleca-Jawecki, Pawel [1 ]
Lipniacki, Tomasz [1 ]
机构
[1] Polish Acad Sci, Inst Fundamental Technol Res, Warsaw, Poland
关键词
MCMC;
D O I
10.1038/s41598-023-37939-8
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Resolving practical non-identifiability of computational models typically requires either additional data or non-algorithmic model reduction, which frequently results in models containing parameters lacking direct interpretation. Here, instead of reducing models, we explore an alternative, Bayesian approach, and quantify the predictive power of non-identifiable models. We considered an example biochemical signalling cascade model as well as its mechanical analogue. For these models, we demonstrated that by measuring a single variable in response to a properly chosen stimulation protocol, the dimensionality of the parameter space is reduced, which allows for predicting the measured variable's trajectory in response to different stimulation protocols even if all model parameters remain unidentified. Moreover, one can predict how such a trajectory will transform in the case of a multiplicative change of an arbitrary model parameter. Successive measurements of remaining variables further reduce the dimensionality of the parameter space and enable new predictions. We analysed potential pitfalls of the proposed approach that can arise when the investigated model is oversimplified, incorrect, or when the training protocol is inadequate. The main advantage of the suggested iterative approach is that the predictive power of the model can be assessed and practically utilised at each step.
引用
收藏
页数:12
相关论文
共 50 条
  • [21] The relative merit of empirical priors in non-identifiable and sloppy models: Applications to models of learning and decision-making Empirical priors
    Spektor, Mikhail S.
    Kellen, David
    PSYCHONOMIC BULLETIN & REVIEW, 2018, 25 (06) : 2047 - 2068
  • [22] Uncertainty Analysis for Non-identifiable Dynamical Systems: Profile Likelihoods, Bootstrapping and More
    Froehlich, Fabian
    Theis, Fabian J.
    Hasenauer, Jan
    COMPUTATIONAL METHODS IN SYSTEMS BIOLOGY, CMSB 2014, 2014, 8859 : 61 - 72
  • [23] Comparison of identifiable and non-identifiable data linkage: health technology assessment of MitraClip using registry, administrative and mortality datasets
    Keltie, Kim
    Cognigni, Paola
    Gross, Sam
    Urwin, Samuel
    Burn, Julie
    Cole, Helen
    Berry, Lee
    Patrick, Hannah
    Sims, Andrew
    BMJ HEALTH & CARE INFORMATICS, 2021, 28 (01)
  • [24] UNUSUAL RIFLING MARKS FOR IDENTIFYING LEAD CORE AND NON-IDENTIFIABLE JACKET PIECES
    SINHA, JK
    MEHROTRA, VK
    KUMAR, LA
    FORENSIC SCIENCE, 1977, 9 (02): : 139 - 144
  • [25] Using Optimal Transformations and Multi-Experiment Fitting to Detect and Reduce Effects of Non-Identifiable Parameters in Non-Linear Dynamical Models
    Maiwald, Thomas
    Hengl, Stefan
    Kreutz, Clemens
    Sorger, Peter K.
    Timmer, Jens
    BIOPHYSICAL JOURNAL, 2009, 96 (03) : 307A - 307A
  • [26] Impossible, Impractical, and Non-Identifiable? New Criteria Regarding Consent for Human Tissue Research in the Declaration of Helsinki
    Colledge, Flora
    Elger, Bernice S.
    BIOPRESERVATION AND BIOBANKING, 2013, 11 (03) : 149 - 152
  • [27] BIG-DATA APPROACH IN ABUNDANCE ESTIMATION OF NON-IDENTIFIABLE ANIMALS WITH CAMERA-TRAPS AT THE SPOTS OF ATTRACTION
    Ivanko, E. E.
    BULLETIN OF THE SOUTH URAL STATE UNIVERSITY SERIES-MATHEMATICAL MODELLING PROGRAMMING & COMPUTER SOFTWARE, 2019, 12 (01): : 20 - 31
  • [28] Fuzzy Adaptive Fault-Tolerant Control for Non-identifiable Multi-agent Systems under Switching Topology
    Zhang, Ao
    Deng, Chao
    INTERNATIONAL JOURNAL OF FUZZY SYSTEMS, 2020, 22 (07) : 2246 - 2257
  • [29] Fuzzy Adaptive Fault-Tolerant Control for Non-identifiable Multi-agent Systems under Switching Topology
    Ao Zhang
    Chao Deng
    International Journal of Fuzzy Systems, 2020, 22 : 2246 - 2257
  • [30] Boosting predictive power of QSAR models
    Fourches, Denis
    Muratov, Eugene
    Pu, Dongqiuye
    Tropsha, Alexander
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2011, 241