A scoping review of natural language processing of radiology reports in breast cancer
被引:3
|
作者:
Saha, Ashirbani
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机构:
McMaster Univ, Dept Oncol, Hamilton, ON, Canada
Hamilton Hlth Sci, Hamilton, ON, Canada
McMaster Univ, Escarpment Canc Res Inst, Hamilton, ON, CanadaMcMaster Univ, Dept Oncol, Hamilton, ON, Canada
Saha, Ashirbani
[1
,2
,3
]
Burns, Levi
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机构:
McMaster Univ, Michael G DeGroote Sch Med, Hamilton, ON, CanadaMcMaster Univ, Dept Oncol, Hamilton, ON, Canada
Burns, Levi
[4
]
Kulkarni, Ameya Madhav
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机构:
McMaster Univ, Dept Radiol, Hamilton, ON, CanadaMcMaster Univ, Dept Oncol, Hamilton, ON, Canada
Kulkarni, Ameya Madhav
[5
]
机构:
[1] McMaster Univ, Dept Oncol, Hamilton, ON, Canada
[2] Hamilton Hlth Sci, Hamilton, ON, Canada
[3] McMaster Univ, Escarpment Canc Res Inst, Hamilton, ON, Canada
[4] McMaster Univ, Michael G DeGroote Sch Med, Hamilton, ON, Canada
[5] McMaster Univ, Dept Radiol, Hamilton, ON, Canada
breast cancer;
natural language processing;
radiology report;
mammography;
machine learning;
deep learning;
artificial intelligence;
ELECTRONIC HEALTH RECORDS;
BI-RADS ASSESSMENT;
MAMMOGRAPHY REPORTS;
INFORMATION EXTRACTION;
AUTOMATIC CLASSIFICATION;
ASSESSMENT CATEGORIES;
VALIDATION;
PRECISION;
ALGORITHM;
DISEASE;
D O I:
10.3389/fonc.2023.1160167
中图分类号:
R73 [肿瘤学];
学科分类号:
100214 ;
摘要:
Various natural language processing (NLP) algorithms have been applied in the literature to analyze radiology reports pertaining to the diagnosis and subsequent care of cancer patients. Applications of this technology include cohort selection for clinical trials, population of large-scale data registries, and quality improvement in radiology workflows including mammography screening. This scoping review is the first to examine such applications in the specific context of breast cancer. Out of 210 identified articles initially, 44 met our inclusion criteria for this review. Extracted data elements included both clinical and technical details of studies that developed or evaluated NLP algorithms applied to free-text radiology reports of breast cancer. Our review illustrates an emphasis on applications in diagnostic and screening processes over treatment or therapeutic applications and describes growth in deep learning and transfer learning approaches in recent years, although rule-based approaches continue to be useful. Furthermore, we observe increased efforts in code and software sharing but not with data sharing.
机构:
Columbia Univ, Dept Biomed Informat, 622 West 168th St,PH20, New York, NY 10032 USAColumbia Univ, Dept Biomed Informat, 622 West 168th St,PH20, New York, NY 10032 USA
Walk, Oliver J. Bear Don't
Nieva, Harry Reyes
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Columbia Univ, Dept Biomed Informat, 622 West 168th St,PH20, New York, NY 10032 USA
Harvard Med Sch, Dept Med, Boston, MA 02115 USAColumbia Univ, Dept Biomed Informat, 622 West 168th St,PH20, New York, NY 10032 USA
Nieva, Harry Reyes
Lee, Sandra Soo-Jin
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Columbia Univ, Dept Med Humanities & Eth, New York, NY 10032 USAColumbia Univ, Dept Biomed Informat, 622 West 168th St,PH20, New York, NY 10032 USA
Lee, Sandra Soo-Jin
Elhadad, Noemie
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Columbia Univ, Dept Biomed Informat, 622 West 168th St,PH20, New York, NY 10032 USAColumbia Univ, Dept Biomed Informat, 622 West 168th St,PH20, New York, NY 10032 USA
机构:
Univ British Columbia, Educ & Counselling Psychol & Special Educ, Vancouver, BC, CanadaUniv British Columbia, Educ & Counselling Psychol & Special Educ, Vancouver, BC, Canada
Laricheva, Maria
Liu, Yan
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机构:
Carleton Univ, Psychol, Ottawa, ON, CanadaUniv British Columbia, Educ & Counselling Psychol & Special Educ, Vancouver, BC, Canada
Liu, Yan
Shi, Edward
论文数: 0引用数: 0
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机构:
Victoria Univ Melbourne, Arts Business & Law, Melbourne, Vic, AustraliaUniv British Columbia, Educ & Counselling Psychol & Special Educ, Vancouver, BC, Canada
Shi, Edward
Wu, Amery
论文数: 0引用数: 0
h-index: 0
机构:
Univ British Columbia, Educ & Counselling Psychol & Special Educ, Vancouver, BC, CanadaUniv British Columbia, Educ & Counselling Psychol & Special Educ, Vancouver, BC, Canada
机构:
Univ Wisconsin, Dept Med, Sch Med & Publ Hlth, ICU Data Sci Lab, Madison, WI USAUniv Wisconsin, Dept Med, Sch Med & Publ Hlth, ICU Data Sci Lab, Madison, WI USA
Gao, Yanjun
Dligach, Dmitriy
论文数: 0引用数: 0
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机构:
Loyola Univ, Dept Comp Sci, Chicago, IL 60611 USAUniv Wisconsin, Dept Med, Sch Med & Publ Hlth, ICU Data Sci Lab, Madison, WI USA
Dligach, Dmitriy
Christensen, Leslie
论文数: 0引用数: 0
h-index: 0
机构:
Univ Wisconsin, Sch Med & Publ Hlth, Madison, WI USAUniv Wisconsin, Dept Med, Sch Med & Publ Hlth, ICU Data Sci Lab, Madison, WI USA
Christensen, Leslie
Tesch, Samuel
论文数: 0引用数: 0
h-index: 0
机构:
Univ Wisconsin, Sch Med & Publ Hlth, Madison, WI USAUniv Wisconsin, Dept Med, Sch Med & Publ Hlth, ICU Data Sci Lab, Madison, WI USA
Tesch, Samuel
Laffin, Ryan
论文数: 0引用数: 0
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机构:
Univ Wisconsin, Sch Med & Publ Hlth, Madison, WI USAUniv Wisconsin, Dept Med, Sch Med & Publ Hlth, ICU Data Sci Lab, Madison, WI USA
Laffin, Ryan
Xu, Dongfang
论文数: 0引用数: 0
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机构:
Harvard Univ, Boston Childrens Hosp, Computat Hlth Informat Program, Boston, MA 02115 USAUniv Wisconsin, Dept Med, Sch Med & Publ Hlth, ICU Data Sci Lab, Madison, WI USA
Xu, Dongfang
Miller, Timothy
论文数: 0引用数: 0
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机构:
Harvard Univ, Boston Childrens Hosp, Computat Hlth Informat Program, Boston, MA 02115 USAUniv Wisconsin, Dept Med, Sch Med & Publ Hlth, ICU Data Sci Lab, Madison, WI USA
Miller, Timothy
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Uzuner, Ozlem
Churpek, Matthew M.
论文数: 0引用数: 0
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机构:
Univ Wisconsin, Dept Med, Sch Med & Publ Hlth, ICU Data Sci Lab, Madison, WI USAUniv Wisconsin, Dept Med, Sch Med & Publ Hlth, ICU Data Sci Lab, Madison, WI USA
Churpek, Matthew M.
Afshar, Majid
论文数: 0引用数: 0
h-index: 0
机构:
Univ Wisconsin, Dept Med, Sch Med & Publ Hlth, ICU Data Sci Lab, Madison, WI USAUniv Wisconsin, Dept Med, Sch Med & Publ Hlth, ICU Data Sci Lab, Madison, WI USA
机构:
Univ Bologna, Dept Class Philol & Italian Studies, Via Zamboni 32, I-40126 Bologna, ItalyUniv Bologna, Dept Class Philol & Italian Studies, Via Zamboni 32, I-40126 Bologna, Italy
机构:
Dana Farber Canc Inst, Div Populat Sci, 450 Brookline Ave, Boston, MA 02115 USA
Dana Farber Canc Inst, Thorac Oncol Program, Boston, MA 02115 USA
Dana Farber Canc Inst, Dept Med Oncol, Boston, MA 02115 USADana Farber Canc Inst, Div Populat Sci, 450 Brookline Ave, Boston, MA 02115 USA
Kehl, Kenneth L.
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Elmarakeby, Haitham
Nishino, Mizuki
论文数: 0引用数: 0
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机构:
Dana Farber Canc Inst, Dept Imaging, Boston, MA 02115 USADana Farber Canc Inst, Div Populat Sci, 450 Brookline Ave, Boston, MA 02115 USA
Nishino, Mizuki
Van Allen, Eliezer M.
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机构:
Dana Farber Canc Inst, Dept Med Oncol, Boston, MA 02115 USADana Farber Canc Inst, Div Populat Sci, 450 Brookline Ave, Boston, MA 02115 USA
Van Allen, Eliezer M.
Lepisto, Eva M.
论文数: 0引用数: 0
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机构:
Dana Farber Canc Inst, Div Populat Sci, 450 Brookline Ave, Boston, MA 02115 USA
Dana Farber Canc Inst, Dept Med Oncol, Boston, MA 02115 USA
Dana Farber Canc Inst, Dept Informat, Boston, MA 02115 USADana Farber Canc Inst, Div Populat Sci, 450 Brookline Ave, Boston, MA 02115 USA
Lepisto, Eva M.
Hassett, Michael J.
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机构:
Dana Farber Canc Inst, Div Populat Sci, 450 Brookline Ave, Boston, MA 02115 USA
Dana Farber Canc Inst, Dept Med Oncol, Boston, MA 02115 USADana Farber Canc Inst, Div Populat Sci, 450 Brookline Ave, Boston, MA 02115 USA
Hassett, Michael J.
Johnson, Bruce E.
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机构:
Dana Farber Canc Inst, Thorac Oncol Program, Boston, MA 02115 USA
Dana Farber Canc Inst, Dept Med Oncol, Boston, MA 02115 USADana Farber Canc Inst, Div Populat Sci, 450 Brookline Ave, Boston, MA 02115 USA
Johnson, Bruce E.
Schrag, Deborah
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Dana Farber Canc Inst, Div Populat Sci, 450 Brookline Ave, Boston, MA 02115 USA
Dana Farber Canc Inst, Dept Med Oncol, Boston, MA 02115 USADana Farber Canc Inst, Div Populat Sci, 450 Brookline Ave, Boston, MA 02115 USA
机构:
Mayo Clin, Dept Hlth Sci Res, Div Biomed Stat & Informat, 200 1st ST SW, Rochester, MN 55905 USAMayo Clin, Dept Hlth Sci Res, Div Biomed Stat & Informat, 200 1st ST SW, Rochester, MN 55905 USA
Wang, Yanshan
Mehrabi, Saeed
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Mayo Clin, Dept Hlth Sci Res, Div Biomed Stat & Informat, 200 1st ST SW, Rochester, MN 55905 USAMayo Clin, Dept Hlth Sci Res, Div Biomed Stat & Informat, 200 1st ST SW, Rochester, MN 55905 USA
Mehrabi, Saeed
Sohn, Sunghwan
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Mayo Clin, Dept Hlth Sci Res, Div Biomed Stat & Informat, 200 1st ST SW, Rochester, MN 55905 USAMayo Clin, Dept Hlth Sci Res, Div Biomed Stat & Informat, 200 1st ST SW, Rochester, MN 55905 USA
Sohn, Sunghwan
Atkinson, Elizabeth J.
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Mayo Clin, Dept Hlth Sci Res, Div Biomed Stat & Informat, 200 1st ST SW, Rochester, MN 55905 USAMayo Clin, Dept Hlth Sci Res, Div Biomed Stat & Informat, 200 1st ST SW, Rochester, MN 55905 USA
Atkinson, Elizabeth J.
Amin, Shreyasee
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机构:
Mayo Clin, Dept Med, Div Rheumatol, 200 1st ST SW, Rochester, MN USA
Mayo Clin, Dept Hlth Sci Res, Div Epidemiol, 200 1st ST SW, Rochester, MN USAMayo Clin, Dept Hlth Sci Res, Div Biomed Stat & Informat, 200 1st ST SW, Rochester, MN 55905 USA
Amin, Shreyasee
Liu, Hongfang
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Mayo Clin, Dept Hlth Sci Res, Div Biomed Stat & Informat, 200 1st ST SW, Rochester, MN 55905 USAMayo Clin, Dept Hlth Sci Res, Div Biomed Stat & Informat, 200 1st ST SW, Rochester, MN 55905 USA