FlyBase: updates to the Drosophila genes and genomes database

被引：66

作者：

Ozturk-Colak, Arzu ^{[1
]}

Marygold, Steven J. ^{[1
]}

Antonazzo, Giulia ^{[1
]}

Attrill, Helen ^{[1
]}

Goutte-Gattat, Damien ^{[1
]}

Jenkins, Victoria K. ^{[2
]}

Matthews, Beverley B. ^{[2
]}

Millburn, Gillian ^{[1
]}

dos Santos, Gilberto ^{[2
]}

Tabone, Christopher J. ^{[2
]}

机构：

[1] Univ Cambridge, Dept Physiol Dev & Neurosci, Downing St, Cambridge CB2 3DY, England

[2] Harvard Univ, Dept Mol & Cellular Biol, Cambridge, MA 02138 USA

来源：

GENETICS | 2024年 / 227卷 / 01期

基金：

美国国家科学基金会; 英国生物技术与生命科学研究理事会; 英国惠康基金; 美国国家卫生研究院; 英国医学研究理事会;

关键词：

FlyBase; model organism database; Drosophila; EXPRESSION ATLAS; COVERAGE;

D O I：

10.1093/genetics/iyad211

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

FlyBase (flybase.org) is a model organism database and knowledge base about Drosophila melanogaster, commonly known as the fruit fly. Researchers from around the world rely on the genetic, genomic, and functional information available in FlyBase, as well as its tools to view and interrogate these data. In this article, we describe the latest developments and updates to FlyBase. These include the introduction of single-cell RNA sequencing data, improved content and display of functional information, updated orthology pipelines, new chemical reports, and enhancements to our outreach resources.

引用

页数：8

共 50 条

[1] FLYBASE - THE DROSOPHILA DATABASE
GELBART, WM
RINDONE, W
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RUSSO, S
MATTHEWS, B
ASHBURNER, M
DRYSDALE, R
DEGREY, A
WHITFIELD, E
WELBOURNE, E
KAUFMAN, T
MATTHEWS, K
GILBERT, D
TOLSTOSHEV, C
NUCLEIC ACIDS RESEARCH, 1994, 22 (17) : 3456 - 3458
[2] FlyBase: The Drosophila database
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Rindone, WP
Chillemi, J
Russo, S
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Matthews, B
Ashburner, M
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deGrey, A
Whitfield, EJ
Kaufman, T
Matthews, K
Gilbert, D
NUCLEIC ACIDS RESEARCH, 1996, 24 (01) : 53 - 56
[3] FlyBase: A Drosophila database
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Millburn, GH
deGrey, A
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[4] FlyBase:: a Drosophila database
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Crosby, M
Matthews, B
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Chillemi, J
Twombly, SR
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Ashburner, M
Drysdale, RA
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[5] FLYBASE - THE DROSOPHILA GENETIC DATABASE
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DEVELOPMENT, 1994, 120 (07): : 2077 - 2079
[6] How to search the database of Drosophila (FlyBase)
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TRENDS IN GLYCOSCIENCE AND GLYCOTECHNOLOGY, 2001, 13 (69) : 89 - 97
[7] FlyBase: updates to the Drosophila melanogaster knowledge base
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[8] The FlyBase database of the Drosophila genome projects and community literature
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Hradecky, P
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Letovsky, S
Matthews, B
Russo, S
Schroeder, A
Smutniak, F
Zhou, P
Zytkovicz, M
Ashburner, M
Drysdale, R
de Grey, A
Foulger, R
Millburn, G
Yamada, C
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Crosby, M
Matthews, B
Chillemi, J
Twombly, SR
Emmert, D
Bayraktaroglu, L
Smutniak, F
Kossida, S
Ashburner, M
Drysdale, RA
Whitfield, EJ
Millburn, GH
de Grey, A
Kaufman, T
Matthews, K
Gilbert, D
Strelets, VS
Grumbling, G
Tolstoshev, C
Rubin, GM
Lewis, S
Helt, G
Misra, S
Harris, N
Brokstein, P
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Matthews, B
Russo, S
Smutniak, F
Ashburner, M
de Grey, A
Drysdale, R
Foulger, R
Knight, K
Millburn, G
Yamada, C
Kaufman, T
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Shemen, C
Rubin, G
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Kaminker, J
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