DGAMDA: Predicting miRNA-disease association based on dynamic graph attention network

被引:1
|
作者
Jia, Changxin [1 ]
Wang, Fuyu [2 ]
Xing, Baoxiang [3 ]
Li, Shaona [1 ]
Zhao, Yang [1 ]
Li, Yu [1 ]
Wang, Qing [4 ,5 ]
机构
[1] Qingdao Univ, Affiliated Hosp, Dept Anesthesiol, Qingdao, Peoples R China
[2] China Univ Petr, Coll Comp Sci & Technol, Qingdao, Peoples R China
[3] Qingdao Univ, Affiliated Hosp, Dept Obstet, Qingdao, Peoples R China
[4] Qingdao Univ, Affiliated Hosp, Dept Endocrine & Metab, Qingdao, Peoples R China
[5] Qingdao Univ, Dept Endocrine & Metab, Affiliated Hosp, 1677 Wutaishan Rd, Qingdao 266000, Peoples R China
关键词
dynamic graph attention; heterogeneous graph attention network; microRNA-disease association; MODEL;
D O I
10.1002/cnm.3809
中图分类号
R318 [生物医学工程];
学科分类号
0831 ;
摘要
MiRNA (microRNA)-disease association prediction has essential applications for early disease screening. The process of traditional biological experimental validation is both time-consuming and expensive. However, as artificial intelligence technology continues to advance, computational methods have become efficient tools for predicting miRNA-disease associations. These methods often rely on the combination of multiple sources of association data and require improved feature mining. This study proposes a dynamic graph attention-based association prediction model, DGAMDA, which combines feature mapping and dynamic graph attention mechanisms through feature mining on a single miRNA-disease association network. DGAMDA effectively solves the problems of feature heterogeneity and inadequate feature mining by previous static graph attention mechanisms and achieves high-precision feature mining and association scoring prediction. We conducted a five-fold cross-validation experiment and obtained the mean values of Accuracy, Precision, Recall, and F1-score, which were .8986, .8869, .9115, and .8984, respectively. Our proposed model outperforms other advanced models in terms of experimental results, demonstrating its effectiveness in feature mining and association prediction based on a single association network. In addition, our model can also be used to predict miRNAs associated with unknown diseases.
引用
收藏
页数:15
相关论文
共 50 条
  • [21] Predicting miRNA-Disease Associations by Combining Graph and Hypergraph Convolutional Network
    Liang, Xujun
    Guo, Ming
    Jiang, Longying
    Fu, Ying
    Zhang, Pengfei
    Chen, Yongheng
    INTERDISCIPLINARY SCIENCES-COMPUTATIONAL LIFE SCIENCES, 2024, 16 (02) : 289 - 303
  • [22] Predicting miRNA-disease association based on inductive matrix completion
    Chen, Xing
    Wang, Lei
    Qu, Jia
    Guan, Na-Na
    Li, Jian-Qiang
    BIOINFORMATICS, 2018, 34 (24) : 4256 - 4265
  • [23] Predicting miRNA-disease association through combining miRNA function and network topological similarities based on MINE
    Cao, Buwen
    Li, Renfa
    Xiao, Sainan
    Deng, Shuguang
    Zhou, Xiangjun
    Zhou, Lang
    ISCIENCE, 2022, 25 (11)
  • [24] WVMDA: Predicting miRNA-Disease Association Based on Weighted Voting
    Zhang, Zhen-Wei
    Gao, Zhen
    Zheng, Chun-Hou
    Li, Lei
    Qi, Su-Min
    Wang, Yu-Tian
    FRONTIERS IN GENETICS, 2021, 12
  • [25] EOESGC: predicting miRNA-disease associations based on embedding of embedding and simplified graph convolutional network
    Pang, Shanchen
    Zhuang, Yu
    Wang, Xinzeng
    Wang, Fuyu
    Qiao, Sibo
    BMC MEDICAL INFORMATICS AND DECISION MAKING, 2021, 21 (01)
  • [26] EOESGC: predicting miRNA-disease associations based on embedding of embedding and simplified graph convolutional network
    Shanchen Pang
    Yu Zhuang
    Xinzeng Wang
    Fuyu Wang
    Sibo Qiao
    BMC Medical Informatics and Decision Making, 21
  • [27] Predicting miRNA-disease associations based on graph attention networks and dual Laplacian regularized least squares
    Wang, Wengang
    Chen, Hailin
    BRIEFINGS IN BIOINFORMATICS, 2022, 23 (05)
  • [28] SGAEMDA: Predicting miRNA-Disease Associations Based on Stacked Graph Autoencoder
    Wang, Shudong
    Lin, Boyang
    Zhang, Yuanyuan
    Qiao, Sibo
    Wang, Fuyu
    Wu, Wenhao
    Ren, Chuanru
    CELLS, 2022, 11 (24)
  • [29] Adaptive deep propagation graph neural network for predicting miRNA-disease associations
    Hu, Hua
    Zhao, Huan
    Zhong, Tangbo
    Dong, Xishang
    Wang, Lei
    Han, Pengyong
    Li, Zhengwei
    BRIEFINGS IN FUNCTIONAL GENOMICS, 2023, 22 (05) : 453 - 462
  • [30] Multi-Kernel Graph Attention Deep Autoencoder for MiRNA-Disease Association Prediction
    Jiao, Cui-Na
    Zhou, Feng
    Liu, Bao-Min
    Zheng, Chun-Hou
    Liu, Jin-Xing
    Gao, Ying-Lian
    IEEE JOURNAL OF BIOMEDICAL AND HEALTH INFORMATICS, 2024, 28 (02) : 1110 - 1121