DGAMDA: Predicting miRNA-disease association based on dynamic graph attention network

被引:1
|
作者
Jia, Changxin [1 ]
Wang, Fuyu [2 ]
Xing, Baoxiang [3 ]
Li, Shaona [1 ]
Zhao, Yang [1 ]
Li, Yu [1 ]
Wang, Qing [4 ,5 ]
机构
[1] Qingdao Univ, Affiliated Hosp, Dept Anesthesiol, Qingdao, Peoples R China
[2] China Univ Petr, Coll Comp Sci & Technol, Qingdao, Peoples R China
[3] Qingdao Univ, Affiliated Hosp, Dept Obstet, Qingdao, Peoples R China
[4] Qingdao Univ, Affiliated Hosp, Dept Endocrine & Metab, Qingdao, Peoples R China
[5] Qingdao Univ, Dept Endocrine & Metab, Affiliated Hosp, 1677 Wutaishan Rd, Qingdao 266000, Peoples R China
关键词
dynamic graph attention; heterogeneous graph attention network; microRNA-disease association; MODEL;
D O I
10.1002/cnm.3809
中图分类号
R318 [生物医学工程];
学科分类号
0831 ;
摘要
MiRNA (microRNA)-disease association prediction has essential applications for early disease screening. The process of traditional biological experimental validation is both time-consuming and expensive. However, as artificial intelligence technology continues to advance, computational methods have become efficient tools for predicting miRNA-disease associations. These methods often rely on the combination of multiple sources of association data and require improved feature mining. This study proposes a dynamic graph attention-based association prediction model, DGAMDA, which combines feature mapping and dynamic graph attention mechanisms through feature mining on a single miRNA-disease association network. DGAMDA effectively solves the problems of feature heterogeneity and inadequate feature mining by previous static graph attention mechanisms and achieves high-precision feature mining and association scoring prediction. We conducted a five-fold cross-validation experiment and obtained the mean values of Accuracy, Precision, Recall, and F1-score, which were .8986, .8869, .9115, and .8984, respectively. Our proposed model outperforms other advanced models in terms of experimental results, demonstrating its effectiveness in feature mining and association prediction based on a single association network. In addition, our model can also be used to predict miRNAs associated with unknown diseases.
引用
收藏
页数:15
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