Enhancing APE1 detection through apurinic/apyrimidinic site inhibition of DNA polymerase: an innovative, highly sensitive approach

被引:0
|
作者
Liu, Zhijun [3 ]
Yan, Bei [2 ]
Liu, Huan [3 ]
Liu, Xiao [3 ]
Xiao, Xianjin [3 ]
Ming, Zhihao [1 ]
机构
[1] Cent South Univ, Xiangya Sch Med, Affiliated Canc Hosp, Dept Urol, Changsha 410006, Peoples R China
[2] Ningxia Med Univ, Gen Hosp, Inst Med Sci, Yinchuan 750004, Ningxia, Peoples R China
[3] Huazhong Univ Sci & Technol, Inst Reprod Hlth, Tongji Med Coll, Wuhan 430030, Peoples R China
基金
中国国家自然科学基金;
关键词
APE1/REF-1; TARGET;
D O I
10.1039/d4cc00304g
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
This study presents an innovative method for the highly sensitive detection of apurinic/apyrimidinic endonuclease 1 (APE1), a crucial biomarker and target for cancer diagnosis and treatment. The method is predicated on our discovery that the apurinic or apyrimidinic site (AP site) can inhibit the activity of Taq DNA polymerase. Subsequent experiments further led to the development of a new amplification method based on the digestion activity of Lambda exonuclease. This approach showed potential to detect trace amounts of APE1 in biological samples with high sensitivity. The inhibitory effect of apurinic or apyrimidinic sites on the polymerase provides a novel principle for APE1 detection with high sensitivity.
引用
收藏
页码:4695 / 4698
页数:4
相关论文
共 50 条
  • [31] Conserved Structural Chemistry for Incision Activity in Structurally Non-homologous Apurinic/Apyrimidinic Endonuclease APE1 and Endonuclease IV DNA Repair Enzymes
    Tsutakawa, Susan E.
    Shin, David S.
    Mol, Clifford D.
    Izumi, Tadahide
    Arvai, Andrew S.
    Mantha, Anil K.
    Szczesny, Bartosz
    Ivanov, Ivaylo N.
    Hosfield, David J.
    Maiti, Buddhadev
    Pique, Mike E.
    Frankel, Kenneth A.
    Hitomi, Kenichi
    Cunningham, Richard P.
    Mitra, Sankar
    Tainer, John A.
    JOURNAL OF BIOLOGICAL CHEMISTRY, 2013, 288 (12) : 8445 - 8455
  • [32] The interplay between Apurinic/apyrimidinic Endonuclease 1 (APE1) and DNA Gquadruplex (G4) in regulating triple-negative breast cancer (TNBC) metastasis
    Chen, Yingling
    Pramanik, Suravi
    Tarpley, Mason
    Kalluchi, Achyuth
    Mohapatra, Bhopal
    Hewitt, Kyle
    Rowley, Michael J.
    Band, Vimla
    Bhakat, Kishor
    CANCER RESEARCH, 2023, 83 (07)
  • [33] Identification and Quantification of DNA Repair Protein Apurinic/Apyrimidinic Endonuclease 1 (APE1) in Human Cells by Liquid Chromatography/Isotope-Dilution Tandem Mass Spectrometry
    Kirkali, Gueldal
    Jaruga, Pawel
    Reddy, Prasad T.
    Tona, Alessandro
    Nelson, Bryant C.
    Li, Mengxia
    Wilson, David M., III
    Dizdaroglu, Miral
    PLOS ONE, 2013, 8 (07):
  • [34] Excision of Carbohydrate-Modified dNMP Analogues from DNA 3' end by Human Apurinic/Apyrimidinic Endonuclease 1 (APE1) and Tyrosyl-DNA Phosphodiesterase 1 (TDP1)
    Dyrkheeva, N. S.
    Lebedeva, N. A.
    Sherstyuk, Yu. V.
    Abramova, T. V.
    Silnikov, V. N.
    Lavrik, O. I.
    MOLECULAR BIOLOGY, 2018, 52 (06) : 922 - 928
  • [35] Excision of Carbohydrate-Modified dNMP Analogues from DNA 3' end by Human Apurinic/Apyrimidinic Endonuclease 1 (APE1) and Tyrosyl-DNA Phosphodiesterase 1 (TDP1)
    N. S. Dyrkheeva
    N. A. Lebedeva
    Yu. V. Sherstyuk
    T. V. Abramova
    V. N. Silnikov
    O. I. Lavrik
    Molecular Biology, 2018, 52 : 922 - 928
  • [36] Extreme Expression of DNA Repair Protein Apurinic/Apyrimidinic Endonuclease 1 (APE1) in Human Breast Cancer As Measured by Liquid Chromatography and Isotope Dilution Tandem Mass Spectrometry
    Coskun, Erdem
    Jaruga, Pawel
    Reddy, Prasad T.
    Dizdaroglu, Miral
    BIOCHEMISTRY, 2015, 54 (38) : 5787 - 5790
  • [37] Apurinic/apyrimidinic endonuclease (APE/REF-1) haploinsufficient mice display tissue-specific differences in DNA polymerase β-dependent base excision repair
    Raffoul, JJ
    Cabelof, DC
    Nakamura, J
    Meira, LB
    Friedberg, EC
    Heydari, AR
    JOURNAL OF BIOLOGICAL CHEMISTRY, 2004, 279 (18) : 18425 - 18433
  • [38] An all-in-one enzymatic DNA network based on catalytic hairpin assembly for label-free and highly sensitive detection of APE1
    Zhou, Shaoying
    Li, Xingrong
    Shu, Xiaojia
    Cai, Xiaoying
    Wu, Haiping
    Ding, Shijia
    Yan, Yurong
    ANALYTICA CHIMICA ACTA, 2023, 1278
  • [39] The Redox function of apurinic/apyrimidinic endonuclease1/redox factor-1 (Ape1/Ref-1) modulates helper T cell response through antigen presenting cells
    Akhter, N.
    Takeda, Y.
    Nara, H.
    Araki, A.
    Asao, N.
    Ishii, N.
    Asao, H.
    EUROPEAN JOURNAL OF IMMUNOLOGY, 2016, 46 : 972 - 973
  • [40] Stochastic bipedal dual-DNA walkers for fast and sensitive detection of apurinic/apyrimidinic endonuclease1 and inhibitor screening
    Liu, Qingyi
    Zhang, Qiongdan
    Mao, Yu
    Sheng, Wenbing
    Yang, Zheng
    Hu, Jinhui
    Zhou, Xudong
    Wen, Zichen
    Li, Yu
    Wang, Wei
    Peng, Caiyun
    Wang, Huizhen
    TALANTA, 2024, 280