The 2022 Report on the Human Proteome from the HUPO Human Proteome Project

被引:29
|
作者
Omenn, Gilbert S. [16 ,17 ]
Lane, Lydie [1 ]
Overall, Christopher M. [2 ]
Pineau, Charles [3 ]
Packer, Nicolle H. [4 ,5 ]
Cristea, Ileana M. [6 ]
Lindskog, Cecilia [7 ]
Weintraub, Susan T. [8 ]
Orchard, Sandra [9 ]
Roehrl, Michael H. A.
Nice, Edouard [10 ]
Liu, Siqi [11 ]
Bandeira, Nuno [12 ]
Chen, Yu-Ju [13 ]
Guo, Tiannan [14 ]
Aebersold, Ruedi [15 ]
Moritz, Robert L. [16 ]
Deutsch, Eric W. [16 ]
机构
[1] Univ Geneva, SIB Swiss Inst Bioinformat, CALIPHO Grp, CH-1015 Lausanne, Switzerland
[2] Univ British Columbia, Vancouver, BC V6T 1Z4, Canada
[3] French Inst Hlth & Med Res, F-35042 Rennes, France
[4] Macquarie Univ, Sydney, NSW 2109, Australia
[5] Griffith Univ, Inst Glycom, Sydney, NSW 2109, Australia
[6] Princeton Univ, Princeton, NJ 08544 USA
[7] Uppsala Univ, S-75236 Uppsala, Sweden
[8] Univ Texas Hlth Sci Ctr San Antonio, San Antonio, TX 78229 USA
[9] EMBL EBI, Hinxton CB10 1SD, Cambs, England
[10] Monash Univ, Clayton, Vic 3800, Australia
[11] BGI Grp, Shenzhen 518083, Peoples R China
[12] Univ Calif San Diego, La Jolla, CA 92093 USA
[13] Natl Taiwan Univ, Acad Sinica, Taipei 11529, Taiwan
[14] Westlake Univ, Guom Lab Big Prote Data, Hangzhou 310024, Zhejiang, Peoples R China
[15] Swiss Fed Inst Technol, Inst Mol Syst Biol, CH-8092 Zurich, Switzerland
[16] Inst Syst Biol, Seattle, WA 98109 USA
[17] Univ Michigan, New York, MI 48109 USA
基金
美国国家卫生研究院; 澳大利亚研究理事会;
关键词
Human Proteome Project (HPP); neXtProt protein existence (PE metrics); missing proteins (MP); non-MS PE1 proteins; uncharacterized protein existence 1 (uPE1); chromosome-centric HPP (C-HPP); Biology and Disease-HPP (B; D-HPP); PeptideAtlas; Mass Spectrometry Interactive Virtual Environment (MassIVE); Human Protein Atlas; small open reading frames (smORFs); Ribo-Seq; Grand Challenge Project; PROTEOGENOMIC CHARACTERIZATION; PROTEINS; BIOMARKER; MEMBRANE; APTAMERS;
D O I
10.1021/acs.jproteome.2c00498
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The 2022 Metrics of the Human Proteome from the HUPO Human Proteome Project (HPP) show that protein expression has now been credibly detected (neXtProt PE1 level) for 18 407 (93.2%) of the 19 750 predicted proteins coded in the human genome, a net gain of 50 since 2021 from data sets generated around the world and reanalyzed by the HPP. Conversely, the number of neXtProt PE2, PE3, and PE4 missing proteins has been reduced by 78 from 1421 to 1343. This represents continuing experimental progress on the human proteome parts list across all the chromosomes, as well as significant reclassifications. Meanwhile, applying proteomics in a vast array of biological and clinical studies continues to yield significant findings and growing integration with other omics platforms. We present highlights from the Chromosome-Centric HPP, Biology and Disease-driven HPP, and HPP Resource Pillars, compare features of mass spectrometry and Olink and Somalogic platforms, note the emergence of translation products from ribosome profiling of small open reading frames, and discuss the launch of the initial HPP Grand Challenge Project, "A Function for Each Protein".
引用
收藏
页码:1024 / 1042
页数:19
相关论文
共 50 条
  • [31] The HUPO Plasma Proteome Project; Next Phase
    Omenn, G. S.
    Paik, Y. -K.
    Mann, M.
    [J]. MOLECULAR & CELLULAR PROTEOMICS, 2006, 5 (10) : S173 - S173
  • [32] Goals and aims of the HUPO brain proteome project
    Hamacher, Michael
    Bustamantel, Nadine Palacios
    Stephan, Christian
    Reidegeld, Kai
    van Hall, Andre
    Marcus, Katrin
    Klose, Joachim
    Meyer, Helmut E.
    [J]. MOLECULAR & CELLULAR PROTEOMICS, 2004, 3 (10) : S175 - S175
  • [33] HUPO Brain Proteome Project; the pilot studies-identification of Human Brain Proteome by multidimensional separations coupled with mass spectrometer
    Park, Y.
    Kim, J.
    Kim, Y.
    Kwon, K.
    Kim, S.
    Yoo, J.
    [J]. MOLECULAR & CELLULAR PROTEOMICS, 2005, 4 (08) : S70 - S70
  • [34] The Human Eye Proteome Project: Updates on an Emerging Proteome
    Ahmad, Meleha T.
    Zhang, Pingbo
    Dufresne, Craig
    Ferrucci, Luigi
    Semba, Richard D.
    [J]. PROTEOMICS, 2018, 18 (5-6)
  • [35] The Human Eye Proteome Project: Perspectives on an emerging proteome
    Semba, Richard D.
    Enghild, Jan J.
    Venkatraman, Vidya
    Dyrlund, Thomas F.
    Van Eyk, Jennifer E.
    [J]. PROTEOMICS, 2013, 13 (16) : 2500 - 2511
  • [36] Human proteome project for medicine
    Archakov, A.
    [J]. FEBS JOURNAL, 2013, 280 : 309 - 309
  • [37] Is a human proteome project next?
    Steinberg, D
    [J]. SCIENTIST, 2001, 15 (07): : 1 - +
  • [38] The human eye proteome project
    Omenn, Gilbert S.
    [J]. PROTEOMICS, 2013, 13 (16) : 2375 - 2376
  • [39] The human liver Proteome project
    Beretta, Laura
    [J]. MOLECULAR & CELLULAR PROTEOMICS, 2007, 6 (11) : 2043 - 2043
  • [40] Deciphering the Interregional and Interhemisphere Proteome of the Human Brain in the Context of the Human Proteome Project
    Biswas, Deeptarup
    Shenoy, Sanjyot Vinayak
    Chetanya, Chetanya
    Lachen-Montes, Mercedes
    Barpanda, Abhilash
    Athithyan, Arunachalam Paramasivan
    Ghosh, Susmita
    Ausin, Karina
    Victoria Zelaya, Maria
    Fernandez-Irigoyen, Joaquin
    Manna, Akash
    Roy, Sudesh
    Talukdar, Arunasu
    Ball, Graham Roy
    Santamaria, Enrique
    Srivastava, Sanjeeva
    [J]. JOURNAL OF PROTEOME RESEARCH, 2021, 20 (12) : 5280 - 5293