Variability to flooding tolerance in barnyardgrass and early flooding benefits on weed management and rice grain yield

Context: Barnyardgrass (Echinochloa crus-galli (L.) Beauv.) is one of the most problematic weed species in paddy fields. The recent large-scale evolution of herbicide resistance in this species requires the adoption of integrated methods of weed control. Objective: The present study aimed to determine the interaction of water depth, flooding irrigation onset, and preemergent herbicides on the control of barnyardgrass populations and to identify the variability and the putative genes involved in the regulation of flooding tolerance in this species. Methods: We identified tolerant, moderately tolerant, and flood-sensitive barnyardgrass populations through water depth-response experiments in a greenhouse. The relative expression of genes related to flooding tolerance were evaluated to confirm the flooding tolerance variability. A field experiment was conducted during the summer seasons of 2020/21 and 2021/22 to assess the interaction of the flooding onset, water depth, and preemergent herbicides on populations with different flood tolerances and herbicide resistance mechanisms. Results: Water depths of 7.5 cm and 12.5 cm and plant height were selected for the diagnosis of flood tolerance. After 28 days under flooding, the 7.5 cm depth reduced plant height by an average of 26.82%. Of the 45 populations evaluated, 43 overcame the water depth of 7.5 cm, and four surpassed 12.5 cm. The relative expression of alcohol dehydrogenase 1 (ADH1), alcohol dehydrogenase 2 (ADH2), pyruvate decarboxylase (PDC1), aldehyde dehydrogenase (ALDH), and sucrose synthase 3 (SUS3) was between eight and sixteen times higher for the floodtolerant population than for the sensitive one. In the field study, the anticipation of flooding to the two-leaves (V2) stage of rice resulted in an increase of up to 55.6% in the control of all populations evaluated compared with conventional irrigation at the four-leaves (V4) stage, including those resistant to herbicides. The grain yield was increased by approximately 11.4% with flooding onset in the V2 stage compared to the V4 stage. Barnyardgrass control and rice grain yield were not affected by water depths of 5 cm or 15 cm. Conclusions: The early flooding, in the V2 stage, increased rice grain yield and favored barnyardgrass control. However, variability in flood tolerance was identified in barnyardgrass populations, which may jeopardize the effect of early flooding for weed control in rice crops. Implications: The results we obtained add information on the basic knowledge of flooding tolerance in barnyardgrass and to the integrated weed management for dry direct-seeded rice.