Construction of disulfidptosis-related lncRNA signature for predicting the prognosis and immune escape in colon adenocarcinoma

被引:3
|
作者
Chen, Pan [1 ]
Yu, Jun [2 ]
Luo, Qian [3 ]
Li, Jie [3 ]
Wang, Wei [4 ]
机构
[1] Southeast Univ, Nanjing Tongren Hosp, Sch Med, Dept Gen Surg, Nanjing 211102, Peoples R China
[2] Nanjing Univ Chinese Med, Affiliated Hosp, Taicang Hosp Tradit Chinese Med, Dept Pediat, Taicang 215400, Peoples R China
[3] Nanjing Med Univ, Affiliated Hosp 2, Dept Oncol, Nanjing 210011, Peoples R China
[4] Lianshui Cty Peoples Hosp, Dept Clin Lab, Huaian 223400, Peoples R China
关键词
Disulfidptosis; COAD; Immune Escape; Machine learning; Prognostic model; NONCODING RNA ZEB1-AS1; COLORECTAL-CANCER; PROLIFERATION; IMMUNOTHERAPY; RESISTANCE;
D O I
10.1186/s12876-023-03020-x
中图分类号
R57 [消化系及腹部疾病];
学科分类号
摘要
Colon adenocarcinoma (COAD) is one of the most frequent types of cancer worldwide. Disulfidptosis has been identified as a new mode of cell death recently. The goal of this study was to explore the possibility of a connection between disulfidptosis and COAD. RNA sequencing data from COAD patients were retrieved from the The Cancer Genome Atlas (TCGA) database for this investigation. R software and various methods were used to identify disulfidptosis-related lncRNAs (DRLs) in COAD, and a prognostic model was created based on 6 DRLs (AP003555.1, AL683813.1, SNHG7, ZEB1-AS1, AC074212.1, RPL37A-DT). The prognostic model demonstrated a good accuracy in predicting the prognosis of COAD patients, according to receiver operating characteristic (ROC) curve and Concordance index (C-index) analyses. Gene Ontology (GO) enrichment analysis and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis revealed significant differences in biological functions and signaling pathways involved in differential genes in risk subgroups, including protein - DNA complex subunit organization, Hippo signaling pathway, Wnt signaling pathway. TIDE analysis was done on risk groupings in this study, and it found that patients in the high-risk group had more immune escape potential and were less probable to react to immunotherapy. Real-time quantitative pcr (qRT-PCR) was used to identify the relatively high expression of 6 DRLs in colon cancer cell lines. In summary, 6 DRLs were identified as possible novel molecular therapy targets for COAD in this investigation. This prognostic model has the potential to be a novel tool for forecasting COAD prognosis in clinical practice, as well as providing new insights on the potential function and mechanism of disulfidptosis in the COAD process.
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页数:9
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