Streptococcus sciuri sp. nov., Staphylococcus marylandisciuri sp. nov. and Staphylococcus americanisciuri sp. nov., isolated from faeces of eastern grey squirrel (Sciurus carolinensis)

被引:1
|
作者
Volokhov, Dmitriy V. [1 ]
Zagorodnyaya, Tatiana A. [1 ]
Furtak, Vyacheslav A. [1 ]
Nattanmai, Geetha [2 ]
Randall, Linnell [2 ]
Jose, Sherly [2 ]
Gao, Yamei [1 ]
Eisenberg, Tobias [3 ]
Delmonte, Pierluigi [4 ]
Blom, Jochen [5 ]
Mitchell, Kara K. [2 ]
机构
[1] US FDA, Ctr Biol Evaluat & Res, 10903 New Hampshire Ave, Silver Spring, MD 20993 USA
[2] New York State Dept Hlth, Wadsworth Ctr, Bacteriol Lab, 120 New Scotland Ave, Albany, NY 12208 USA
[3] Hessian State Lab LHL, Dept Vet Med, Schubertstr 60, D-35392 Giessen, Germany
[4] US FDA, Ctr Food Safety & Appl Nutr, 5001 Campus Dr, College Pk, MD 20740 USA
[5] Justus Liebig Univ Giessen, Bioinformat & Syst Biol, Heinrich Buff Ring 58, D-35392 Giessen, Germany
关键词
Streptococcus; Staphylococcus; squirrel; phylogeny; 16S rRNA; genomics; 16S RIBOSOMAL-RNA; PROKARYOTIC TAXONOMY; GENE; IDENTIFICATION; CLASSIFICATION; SEPARATION; RPOB; SODA; SET; ERA;
D O I
10.1099/ijsem.0.006015
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
One novel Streptococcus strain (SQ9- PEAT) and two novel Staphylococcus strains (SQ8- PEAT and GRT3T) were isolated from faeces of a wild eastern grey squirrel. The strains were non- spore-forming, non-motile Gram-positive cocci, facultative anaer-obes. The genomes for these strains were sequenced. The 16S rRNA gene and core-genome- based phylogenetic analyses showed that strain SQ9- PEAT was closely related to Streptococcus hyointestinalis, strain SQ8- PEAT to Staphylococcus petten-koferi and Staphylococcus argensis, and strain GRT3T to Staphylococcus rostri, Staphylococcus muscae and Staphylococcus microti. Average nucleotide identity and pairwise digital DNA-DNA hybridization values calculated for these novel strains compared to type strain genomes of phylogenetically related species within the genera Streptococcus and Staphylococcus clearly revealed that strain SQ9- PEAT represents a novel species of the genus Streptococcus and strains SQ8- PEAT and GRT3T represent two novel species of the genus Staphylococcus. Phenotypical features of these novel type strains differed from the features of the type strains of other phylogenetically related species. MALDI- TOF mass spectrometry supported identification of these novel species. Based on these data, we propose one novel species of the genus Streptococcus, for which the name Streptococcus sciuri sp. nov. with the type strain SQ9- PEAT (=DSM 114656T=CCUG 76426T=NCTC 14727T) is proposed, and two novel species of the genus Staphylococcus, for which the names Staphylococcus marylandisciuri sp. nov. with the type strain SQ8-PEAT (=DSM 114685T=CCUG 76423T=NCTC 14723T) and Staphylococcus americanisciuri sp. nov. with the type strain GRT3T (=DSM 114696T=CCUG 76427T=NCTC 14722T) are proposed. The genome G+C contents are 38.29, 36.49 and 37.26 mol% and complete draft genome sizes are 1 692 266, 2 371 088 and 2 237 001 bp for strains SQ9- PEAT, SQ8-PEAT and GRT3T, respectively.
引用
收藏
页数:13
相关论文
共 50 条
  • [21] Gordonia zhenghanii sp. nov. and Gordonia liuliyuniae sp. nov., isolated from bat faeces
    Huang, Yuyuan
    Gong, Jian
    Dong, Lingzhi
    Yang, Jing
    Lu, Shan
    Lai, Xin-He
    Pu, Ji
    Jin, Dong
    Xu, Jianguo
    INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2022, 72 (10)
  • [22] Pseudomonas piscium sp. nov., Pseudomonas pisciculturae sp. nov., Pseudomonas mucoides sp. nov. and Pseudomonas neuropathica sp. nov. isolated from rainbow trout
    Duman, Muhammed
    Mulet, Magdalena
    Altun, Soner
    Saticioglu, Izzet Burcin
    Gomila, Margarita
    Lalucat, Jorge
    Garcia-Valdes, Elena
    INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2021, 71 (03)
  • [23] Faecalibacillus intestinalis gen. nov., sp. nov. and Faecalibacillus faecis sp. nov., isolated from human faeces
    Seo, Boram
    Jeon, Kyungchan
    Baek, Inwoo
    Lee, Yung Mi
    Baek, Kiwoon
    Ko, GwangPyo
    INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2019, 69 (07) : 2120 - 2128
  • [24] Mesoterricola silvestris gen. nov., sp. nov., Mesoterricola sediminis sp. nov., Geothrix oryzae sp. nov., Geothrix edaphica sp. nov., Geothrix rubra sp. nov., and Geothrix limicola sp. nov., six novel members of Acidobacteriota isolated from soils
    Itoh, Hideomi
    Sugisawa, Yumi
    Mise, Kazumori
    Xu, Zhenxing
    Kuniyasu, Miyu
    Ushijima, Natsumi
    Kawano, Keisuke
    Kobayashi, Emiko
    Shiratori, Yutaka
    Masuda, Yoko
    Senoo, Keishi
    INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2023, 73 (09)
  • [25] Five novel bifidobacterial species isolated from faeces of primates in two Czech zoos: Bifidobacterium erythrocebi sp. nov., Bifidobacterium moraviense sp. nov., Bifidobacterium oedipodis sp. nov., Bifidobacterium olomucense sp. nov. and Bifidobacterium panos sp. nov.
    Neuzil-Bunesova, Vera
    Lugli, Gabriele Andrea
    Modrackova, Nikol
    Vlkova, Eva
    Bolechova, Petra
    Burtscher, Johanna
    Longhi, Giulia
    Mancabelli, Leonardo
    Killer, Jiri
    Domig, Konrad
    Ventura, Marco
    INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2021, 71 (01) : 1 - 12
  • [26] Nocardioides euryhalodurans sp. nov., Nocardioides seonyuensis sp. nov. and Nocardioides eburneiflavus sp. nov., isolated from soil
    Roh, Su Gwon
    Lee, Chan
    Kim, Min-Kyeong
    Kang, Hye-Jeong
    Kim, Yeong Seok
    Kim, Min Ji
    Malik, Adeel
    Kim, Seung Bum
    INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2020, 70 (04) : 2682 - 2689
  • [27] Fourteen new Polynucleobacter species: P. brandtiae sp. nov., P. kasalickyi sp. nov., P. antarcticus sp. nov., P. arcticus sp. nov., P. tropicus sp. nov., P. bastaniensis sp. nov., P. corsicus sp. nov., P. finlandensis sp. nov., P. ibericus sp. nov., P. hallstattensis sp. nov., P. alcilacus sp. nov., P. nymphae sp. nov., P. paludilacus sp. nov. and P. parvulilacunae sp. nov.
    Hahn, Martin W.
    Pitt, Alexandra
    Schmidt, Johanna
    Camacho, Antonio
    INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2022, 72 (06)
  • [29] Flavobacterium restrictum sp. nov., Flavobacterium rhamnosiphilum sp. nov., and Flavobacterium zepuense sp. nov. isolated from glaciers
    Zhang, Guo-Qing
    Yang, Lei-Lei
    Liu, Qing
    Liu, Hong-Can
    Zhou, Yu-Guang
    Xin, Yu-Hua
    INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2020, 70 (08) : 4583 - 4590
  • [30] Enterococcus pingfangensis sp. nov., Enterococcus dongliensis sp. nov., Enterococcus hulanensis sp. nov., Enterococcus nangangensis sp. nov. and Enterococcus songbeiensis sp. nov., isolated from Chinese traditional pickle juice
    Li, Yu Qin
    Gu, Chun Tao
    INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2019, 69 (10) : 3196 - 3206