Combined Transcriptome and Metabolome Analysis of Smooth Muscle of Myostatin Knockout Cattle

被引:8
|
作者
Gu, Mingjuan [1 ,2 ]
Wang, Song [1 ,3 ]
Di, Anqi [1 ]
Wu, Di [1 ]
Hai, Chao [1 ]
Liu, Xuefei [1 ]
Bai, Chunling [1 ]
Su, Guanghua [1 ]
Yang, Lei [1 ]
Li, Guangpeng [1 ]
机构
[1] Inner Mongolia Univ, Coll Life Sci, State Key Lab Reprod Regulat & Breeding Grassland, Hohhot 010021, Peoples R China
[2] Inner Mongolia Agr Univ, Coll Anim Sci, Hohhot 010018, Peoples R China
[3] Northeast Agr Univ, Coll Life Sci, Harbin 150030, Peoples R China
关键词
myostatin; knockout; transcriptomics; metabolomics; combined analysis; cattle; smooth muscle; SPECTROMETRY DATA; MUTATIONS; MASS; PERFORMANCE;
D O I
10.3390/ijms24098120
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Myostatin (MSTN), a growth and differentiation factor, plays an important role in regulating skeletal muscle growth and development. MSTN knockout (MSTN-KO) leads to skeletal muscle hypertrophy and regulates metabolic homeostasis. Moreover, MSTN is also detected in smooth muscle. However, the effect of MSTN-KO on smooth muscle has not yet been reported. In this study, combined metabolome and transcriptome analyses were performed to investigate the metabolic and transcriptional profiling in esophageal smooth muscles of MSTN-KO Chinese Luxi Yellow cattle (n = 5, 24 months, average body weight 608.5 +/- 17.62 kg) and wild-type (WT) Chinese Luxi Yellow cattle (n = 5, 24 months, average body weight 528.25 +/- 11.03 kg). The transcriptome was sequenced using the Illumina Novaseq (TM) 6000 sequence platform. In total, 337 significantly up-and 129 significantly down-regulated genes were detected in the MSTN-KO cattle compared with the WT Chinese Luxi Yellow cattle. Functional enrichment analysis indicated that the DEGs were mainly enriched in 67 signaling pathways, including cell adhesion molecules, tight junction, and the cGMP-PKG signaling pathway. Metabolomics analysis by liquid chromatography-tandem mass spectrometry (LC-MS/MS) identified 130 differential metabolites between the groups, with 56 up-regulated and 74 down-regulated in MSTN knockout cattle compared with WT cattle. Differential metabolites were significantly enriched in 31 pathways, including glycerophospholipid metabolism, histidine metabolism, glutathione metabolism, and purine metabolism. Transcriptome and metabolome were combined to analyze the significant enrichment pathways, and there were three metabolically related pathways, including histidine metabolism, purine metabolism, and arginine and proline metabolism. These results provide important references for in-depth research on the effect of MSTN knockout on smooth muscle.
引用
收藏
页数:15
相关论文
共 50 条
  • [41] Combined Metabolome and Transcriptome Analysis Elucidates Sugar Accumulation in Wucai (Brassica campestris L.)
    Wang, Chenggang
    Zhou, Jiajie
    Zhang, Shengnan
    Gao, Xun
    Yang, Yitao
    Hou, Jinfeng
    Chen, Guohu
    Tang, Xiaoyan
    Wu, Jianqiang
    Yuan, Lingyun
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2023, 24 (05)
  • [42] Combined analysis of the transcriptome and metabolome provides insights into the fleshy stem expansion mechanism in stem lettuce
    Huang, Ying
    Li, Yanwen
    Liu, Zhenning
    Chen, Wanqin
    Wang, Yalin
    Wang, Xiaohua
    Liu, Yihua
    Zheng, Yangxia
    FRONTIERS IN PLANT SCIENCE, 2022, 13
  • [43] Key genes and metabolites that regulate wool fibre diameter identified by combined transcriptome and metabolome analysis
    Yue, Lin
    Lu, Zengkui
    Guo, Tingting
    Liu, Jianbin
    Yang, Bohui
    Yuan, Chao
    GENOMICS, 2024, 116 (05)
  • [44] The Combined Analysis of the Transcriptome and Metabolome Revealed the Possible Mechanism of Flower Bud Formation in Amorphophallus bulbifer
    Li, Wenchao
    Xu, Peng
    Qian, Cheng
    Zhao, Xing
    Xu, Huini
    Li, Kunzhi
    AGRONOMY-BASEL, 2024, 14 (03):
  • [45] Combined Analysis of the Metabolome and Transcriptome Sheds New Light on the Mechanisms of Seed Maturation in Amorphophallus muelleri
    Zhao, Yongteng
    Yang, Min
    Qi, Ying
    Gao, Penghua
    Ke, Yanguo
    Liu, Jiani
    Wei, Huanyu
    Li, Lifang
    Pan, Hongkun
    Huang, Feiyan
    Yu, Lei
    JOURNAL OF PLANT GROWTH REGULATION, 2024, 43 (11) : 4263 - 4278
  • [46] Combined metabolome and transcriptome analysis reveals key components of complete desiccation tolerance in an anhydrobiotic insect
    Ryabova, Alina
    Cornette, Richard
    Cherkasov, Alexander
    Watanabe, Masahiko
    Okuda, Takashi
    Shagimardanova, Elena
    Kikawada, Takahiro
    Gusev, Oleg
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2020, 117 (32) : 19209 - 19220
  • [47] Differential Regulation of Anthocyanins in Cerasus humilis Fruit Color Revealed by Combined Transcriptome and Metabolome Analysis
    Ji, Xiaolong
    Ren, Jing
    Lang, Shaoyu
    Wang, Di
    Zhu, Liwei
    Song, Xingshun
    FORESTS, 2020, 11 (10): : 1 - 17
  • [48] Combined analysis of transcriptome and metabolome reveals the molecular mechanism and candidate genes of Haloxylon drought tolerance
    Yang, Fang
    Lv, Guanghui
    FRONTIERS IN PLANT SCIENCE, 2022, 13
  • [49] Combined transcriptome and metabolome analysis revealed the molecular mechanisms of fruit skin coloration in pink strawberry
    Xiao, Wenfei
    Liu, Aichun
    Lai, Wenguo
    Wang, Jianrong
    Li, Xiaoyuan
    Zha, Yan
    Zhao, Bo
    Chen, Xiaoyang
    Yu, Hong
    FRONTIERS IN PLANT SCIENCE, 2024, 15
  • [50] Comprehensive analysis of the mouse metabolome based on the transcriptome
    Bono, H
    Nikaido, I
    Kasukawa, T
    Hayashizaki, Y
    Okazaki, Y
    GENOME RESEARCH, 2003, 13 (6B) : 1345 - 1349