Analysis of indel and structural variant error profiles in deep next generation sequencing data

被引：0
|
作者：
Shao, Ying
Tran, Quang
Kolekar, Pandurang
Liu, Yanling
McBride, Andrea
Jones, Tyler
Mulder, Heather
Ji, Lingyun
Huang, Benjamin
Meshinchi, Soheil
Klco, Jeffery
Zhang, Jinghui
Carroll, William
Loh, Mignon
Brown, Patrick
Easton, John
Ma, Xiaotu
机构：
来源：
CANCER RESEARCH | 2023年 / 83卷 / 08期
关键词：
D O I：
10.1158/1538-7445.AM2023-LB077
中图分类号：
R73 [肿瘤学];
学科分类号：
100214 ;
摘要：
LB077
引用
收藏
页数：3
相关论文
共 50 条
  • [31] SeqVItA: Sequence Variant Identification and Annotation Platform for Next Generation Sequencing Data
    Dharanipragada, Prashanthi
    Seelam, Sampreeth Reddy
    Parekh, Nita
    [J]. FRONTIERS IN GENETICS, 2018, 9
  • [32] Consensus Rules in Variant Detection from Next-Generation Sequencing Data
    Jia, Peilin
    Li, Fei
    Xia, Jufeng
    Chen, Haiquan
    Ji, Hongbin
    Pao, William
    Zhao, Zhongming
    [J]. PLOS ONE, 2012, 7 (06):
  • [33] Single-Variant and Multi-Variant Trend Tests for Genetic Association with Next-Generation Sequencing That Are Robust to Sequencing Error
    Kim, Wonkuk
    Londono, Douglas
    Zhou, Lisheng
    Xing, Jinchuan
    Nato, Alejandro Q.
    Musolf, Anthony
    Matise, Tara C.
    Finch, Stephen J.
    Gordon, Derek
    [J]. HUMAN HEREDITY, 2012, 74 (3-4) : 172 - 183
  • [34] VarAFT: a variant annotation and filtration system for human next generation sequencing data
    Desvignes, Jean-Pierre
    Bartoli, Marc
    Delague, Valerie
    Krahn, Martin
    Miltgen, Morgane
    Beroud, Christophe
    Salgado, David
    [J]. NUCLEIC ACIDS RESEARCH, 2018, 46 (W1) : W545 - W553
  • [35] NGS Variant Manager - The Ultimate Tool for Analysis of High Throughput Next-Generation Sequencing Data
    Oultache, A.
    Chenni, A. E.
    Hedvat, C. V.
    Nafa, K.
    [J]. JOURNAL OF MOLECULAR DIAGNOSTICS, 2013, 15 (06): : 933 - 933
  • [36] SNVer: a statistical tool for variant calling in analysis of pooled or individual next-generation sequencing data
    Wei, Zhi
    Wang, Wei
    Hu, Pingzhao
    Lyon, Gholson J.
    Hakonarson, Hakon
    [J]. NUCLEIC ACIDS RESEARCH, 2011, 39 (19)
  • [37] Comparison of Two Variant Analysis Programs for Next-Generation Sequencing Data of Whole Mitochondrial Genome
    Lee, Seung Eun
    Kim, Ga Eun
    Kim, Hajin
    Chung, Doo Hyun
    Lee, Soong Deok
    Kim, Moon-Young
    [J]. JOURNAL OF KOREAN MEDICAL SCIENCE, 2023, 38 (36) : 1 - 13
  • [38] Fast and scalable software for comparative variant analysis and visualization of massive next-generation sequencing data
    Katainen, Riku
    Makinen, Veli
    Aaltonen, Lauri A.
    Pitkanen, Esa
    [J]. CANCER RESEARCH, 2016, 76
  • [39] Benchmarking variant callers in next-generation and third-generation sequencing analysis
    Pei, Surui
    Liu, Tao
    Ren, Xue
    Li, Weizhong
    Chen, Chongjian
    Xie, Zhi
    [J]. BRIEFINGS IN BIOINFORMATICS, 2021, 22 (03)
  • [40] deepTools2: a next generation web server for deep-sequencing data analysis
    Ramirez, Fidel
    Ryan, Devon P.
    Gruening, Bjoern
    Bhardwaj, Vivek
    Kilpert, Fabian
    Richter, Andreas S.
    Heyne, Steffen
    Dundar, Friederike
    Manke, Thomas
    [J]. NUCLEIC ACIDS RESEARCH, 2016, 44 (W1) : W160 - W165
12345