Analysis of indel and structural variant error profiles in deep next generation sequencing data

被引：0
|
作者：
Shao, Ying
Tran, Quang
Kolekar, Pandurang
Liu, Yanling
McBride, Andrea
Jones, Tyler
Mulder, Heather
Ji, Lingyun
Huang, Benjamin
Meshinchi, Soheil
Klco, Jeffery
Zhang, Jinghui
Carroll, William
Loh, Mignon
Brown, Patrick
Easton, John
Ma, Xiaotu
机构：
来源：
CANCER RESEARCH | 2023年 / 83卷 / 08期
关键词：
D O I：
10.1158/1538-7445.AM2023-LB077
中图分类号：
R73 [肿瘤学];
学科分类号：
100214 ;
摘要：
LB077
引用
收藏
页数：3
相关论文
共 50 条
  • [1] Analysis of error profiles in deep next-generation sequencing data
    Ma, Xiaotu
    Shao, Ying
    Tian, Liqing
    Flasch, Diane A.
    Mulder, Heather L.
    Edmonson, Michael N.
    Liu, Yu
    Chen, Xiang
    Newman, Scott
    Nakitandwe, Joy
    Li, Yongjin
    Li, Benshang
    Shen, Shuhong
    Wang, Zhaoming
    Shurtleff, Sheila
    Robison, Leslie L.
    Levy, Shawn
    Easton, John
    Zhang, Jinghui
    [J]. GENOME BIOLOGY, 2019, 20 (1)
  • [2] Analysis of error profiles in deep next-generation sequencing data
    Ma, Xiaotu
    Zhang, Jinghui
    [J]. CANCER RESEARCH, 2019, 79 (13)
  • [3] Analysis of error profiles in deep next-generation sequencing data
    Xiaotu Ma
    Ying Shao
    Liqing Tian
    Diane A. Flasch
    Heather L. Mulder
    Michael N. Edmonson
    Yu Liu
    Xiang Chen
    Scott Newman
    Joy Nakitandwe
    Yongjin Li
    Benshang Li
    Shuhong Shen
    Zhaoming Wang
    Sheila Shurtleff
    Leslie L. Robison
    Shawn Levy
    John Easton
    Jinghui Zhang
    [J]. Genome Biology, 20
  • [4] A survey of tools for variant analysis of next-generation genome sequencing data
    Pabinger, Stephan
    Dander, Andreas
    Fischer, Maria
    Snajder, Rene
    Sperk, Michael
    Efremova, Mirjana
    Krabichler, Birgit
    Speicher, Michael R.
    Zschocke, Johannes
    Trajanoski, Zlatko
    [J]. BRIEFINGS IN BIOINFORMATICS, 2014, 15 (02) : 256 - 278
  • [5] SNVerGUI: a desktop tool for variant analysis of next-generation sequencing data
    Wang, Wei
    Hu, Weicheng
    Hou, Fang
    Hu, Pingzhao
    Wei, Zhi
    [J]. JOURNAL OF MEDICAL GENETICS, 2012, 49 (12) : 753 - 755
  • [6] Indel variant analysis of short-read sequencing data with Scalpel
    Han Fang
    Ewa A Bergmann
    Kanika Arora
    Vladimir Vacic
    Michael C Zody
    Ivan Iossifov
    Jason A O'Rawe
    Yiyang Wu
    Laura T Jimenez Barron
    Julie Rosenbaum
    Michael Ronemus
    Yoon-ha Lee
    Zihua Wang
    Esra Dikoglu
    Vaidehi Jobanputra
    Gholson J Lyon
    Michael Wigler
    Michael C Schatz
    Giuseppe Narzisi
    [J]. Nature Protocols, 2016, 11 : 2529 - 2548
  • [7] Variational inference for rare variant detection in deep, heterogeneous next-generation sequencing data
    Fan Zhang
    Patrick Flaherty
    [J]. BMC Bioinformatics, 18
  • [8] Variational inference for rare variant detection in deep, heterogeneous next-generation sequencing data
    Zhang, Fan
    Flaherty, Patrick
    [J]. BMC BIOINFORMATICS, 2017, 18
  • [9] DeNovoCNN: A deep learning approach to de novo variant calling in next generation sequencing data
    Khazeeva, Gelana
    Sablauskas, Karolis
    Van der Sanden, Bart
    Steyaert, Wouter
    Kwint, Michael
    Rots, Dmitrijs
    Hinne, Max
    van Gerven, Marcel
    Yntema, Helger
    Vissers, Lisenka
    Gilissen, Christian
    [J]. EUROPEAN JOURNAL OF HUMAN GENETICS, 2024, 32 : 662 - 662
  • [10] DeNovoCNN: a deep learning approach to de novo variant calling in next generation sequencing data
    Khazeeva, Gelana
    Sablauskas, Karolis
    van der Sanden, Bart
    Steyaert, Wouter
    Kwint, Michael
    Rots, Dmitrijs
    Hinne, Max
    van Gerven, Marcel
    Yntema, Helger
    Vissers, Lisenka
    Gilissen, Christian
    [J]. NUCLEIC ACIDS RESEARCH, 2022, 50 (17) : e97
12345