DMFF: An Open-Source Automatic Differentiable Platform for Molecular Force Field Development and Molecular Dynamics Simulation

被引:18
|
作者
Wang, Xinyan [1 ]
Li, Jichen [1 ]
Yang, Lan [2 ]
Chen, Feiyang [1 ]
Wang, Yingze [1 ]
Chang, Junhan [1 ]
Chen, Junmin [2 ]
Feng, Wei [1 ]
Zhang, Linfeng [3 ]
Yu, Kuang [2 ,4 ]
机构
[1] DP Technol, Beijing 100080, Peoples R China
[2] Tsinghua Berkley Shenzhen Inst, Shenzhen 518055, Guangdong, Peoples R China
[3] AI Sci Inst, Beijing 100080, Peoples R China
[4] Tsinghua Shenzhen Int Grad Sch, Shenzhen 518055, Guangdong, Peoples R China
基金
中国国家自然科学基金;
关键词
PARAMETERIZATION; EFFICIENT;
D O I
10.1021/acs.jctc.2c01297
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Inthe simulation of molecular systems, the underlying force field(FF) model plays an extremely important role in determining the reliabilityof the simulation. However, the quality of the state-of-the-art molecularforce fields is still unsatisfactory in many cases, and the FF parameterizationprocess largely relies on human experience, which is not scalable.To address this issue, we introduce DMFF, an open-source molecularFF development platform based on an automatic differentiation technique.DMFF serves as a powerful tool for both top-down and bottom-up FFdevelopment. Using DMFF, both energies/forces and thermodynamic quantitiessuch as ensemble averages and free energies can be evaluated in adifferentiable way, realizing an automatic, yet highly flexible FFoptimization workflow. DMFF also eases the evaluation of forces andvirial tensors for complicated advanced FFs, helping the fast validationof new models in molecular dynamics simulation. DMFF has been releasedas an open-source package under the LGPL-3.0 license and is availableat https://github.com/deepmodeling/DMFF.
引用
收藏
页码:5897 / 5909
页数:13
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