EBV-Associated Hub Genes as Potential Biomarkers for Predicting the Prognosis of Nasopharyngeal Carcinoma

被引:3
|
作者
Ding, Tengteng [1 ,2 ]
Zhang, Yuanbin [1 ,2 ]
Ren, Zhixuan [3 ]
Cong, Ying [1 ,2 ]
Long, Jingyi [2 ,4 ]
Peng, Manli [1 ,2 ]
Faleti, Oluwasijibomi Damola [2 ,4 ]
Yang, Yinggui [1 ,5 ]
Li, Xin [1 ,2 ]
Lyu, Xiaoming [2 ,4 ]
机构
[1] Southern Med Univ, Clin Innovat & Res Ctr CIRC, Shenzhen Key Lab Viral Oncol, Shenzhen Hosp, Shenzhen 518100, Peoples R China
[2] Southern Med Univ, Sch Clin Med 3, Guangzhou 510630, Peoples R China
[3] Fudan Univ, Huadong Hosp, Dept Radiat Oncol, Shanghai 200040, Peoples R China
[4] Southern Med Univ, Affiliated Hosp 3, Dept Lab Med, Guangzhou 510630, Peoples R China
[5] Southern Med Univ, Shenzhen Hosp, Dept Urol, Shenzhen 518100, Peoples R China
来源
VIRUSES-BASEL | 2023年 / 15卷 / 09期
关键词
Epstein-Barr virus; nasopharyngeal carcinoma; prognosis; hub genes; DOWN-REGULATION; EXPRESSION; DNA; CANCER;
D O I
10.3390/v15091915
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
This study aimed to develop a model using Epstein-Barr virus (EBV)-associated hub genes in order to predict the prognosis of nasopharyngeal carcinoma (NPC). Differential expression analysis, univariate regression analysis, and machine learning were performed in three microarray datasets (GSE2371, GSE12452, and GSE102349) collected from the GEO database. Three hundred and sixty-six EBV-DEGs were identified, 25 of which were found to be significantly associated with NPC prognosis. These 25 genes were used to classify NPC into two subtypes, and six genes (C16orf54, CD27, CD53, CRIP1, RARRES3, and TBC1D10C) were found to be hub genes in NPC related to immune infiltration and cell cycle regulation. It was shown that these genes could be used to predict the prognosis of NPC, with functions related to tumor proliferation and immune infiltration, making them potential therapeutic targets. The findings of this study could aid in the development of screening and prognostic methods for NPC based on EBV-related features.
引用
收藏
页数:22
相关论文
共 50 条
  • [41] SEROREACTIVITY AGAINST EPSTEIN-BARR VIRUS (EBV) IN FAMILY MEMBERS OF EBV-ASSOCIATED NASOPHARYNGEAL CARCINOMA AND NON-FAMILY INDIVIDUALS
    Hutajulu, S. H.
    Argy, G.
    Herdini, C.
    Hariwiyanto, B.
    Jati, B. R.
    Haryana, S. M.
    Fachiroh, J.
    Middeldorp, J. M.
    ANNALS OF ONCOLOGY, 2014, 25
  • [42] M2-polarized macrophages increase invasiveness of EBV-associated nasopharyngeal carcinoma by inducing invadopodia formation
    Tang, Wilson Wing Chung
    You, Chan Ping
    Jones, Gareth E.
    Tsao, George Sai-Wah
    Tsang, Anna Chi Man
    CANCER RESEARCH, 2018, 78 (13)
  • [43] RETRACTED: A Review on the Application of PD-1 Blockade in EBV-Associated Nasopharyngeal Carcinoma Immunotherapy (Retracted Article)
    Bian, Jin
    Niu, Yan
    Ma, Yanli
    Chen, Fuhua
    Ma, Ning
    APPLIED BIONICS AND BIOMECHANICS, 2022, 2022
  • [44] Down-regulation of LPA receptor 5 contributes to aberrant LPA signalling in EBV-associated nasopharyngeal carcinoma
    Yap, Lee Fah
    Velapasamy, Sharmila
    Lee, Hui Min
    Thavaraj, Selvam
    Rajadurai, Pathmanathan
    Wei, Wenbin
    Vrzalikova, Katerina
    Ibrahim, Maha Hafez
    Khoo, Alan Soo-Beng
    Tsao, Sai Wah
    Paterson, Ian C.
    Taylor, Graham S.
    Dawson, Christopher W.
    Murray, Paul G.
    JOURNAL OF PATHOLOGY, 2015, 235 (03): : 456 - 465
  • [45] Identification of a recurrent transforming UBR5-ZNF423 fusion gene in EBV-associated nasopharyngeal carcinoma
    Chung, Grace T. Y.
    Lung, Raymond W. M.
    Hui, Angela B. Y.
    Yip, Kevin Y. L.
    Woo, John K. S.
    Chow, Chit
    Tong, Carol Y. K.
    Lee, Sau-Dan
    Yuen, Jessie W. F.
    Lun, Samantha W. M.
    Tso, Ken K. Y.
    Wong, Nathalie
    Tsao, Sai-Wah
    Yip, Timothy T. C.
    Busson, Pierre
    Kim, Hyungtae
    Seo, Jeong-Sun
    O'Sullivan, Brian
    Liu, Fei-Fei
    To, Ka-Fai
    Lo, Kwok-Wai
    JOURNAL OF PATHOLOGY, 2013, 231 (02): : 158 - 167
  • [46] MicroRNA-183 suppresses cancer stem-like cell properties in EBV-associated nasopharyngeal carcinoma
    Cheung, Chartia Ching-Mei
    Lun, Samantha Wei-Man
    Chung, Grace Tin-Yun
    Chow, Chit
    Lo, Carman
    Choy, Kwong-Wai
    Lo, Kwok-Wai
    BMC CANCER, 2016, 16
  • [47] Immunohistochemical expression of Bcl-2 oncoprotein in EBV-associated nasopharyngeal carcinoma correlated to histological type and survival
    VeraSempere, FJ
    Burgos, JS
    Botella, MS
    Morera, C
    HISTOLOGY AND HISTOPATHOLOGY, 1997, 12 (01) : 9 - 18
  • [48] Whole-transcriptome analyses of EBV-associated nasopharyngeal carcinoma using next-generation transcriptome sequencing
    Mak, Cathy Ka-Yan
    Chung, Grace Tin-Yan
    Yip, Kevin Yuk-Lap
    Tso, Ken Kai-Yuen
    Lee, Sau-Dan
    Cheung, Siu-Tim
    Tsao, Sai-Wah
    Busson, Pierre
    To, Ka-Fai
    Lo, Kwok-Wai
    CANCER RESEARCH, 2014, 74 (19)
  • [49] MicroRNA-183 suppresses cancer stem-like cell properties in EBV-associated nasopharyngeal carcinoma
    Chartia Ching-Mei Cheung
    Samantha Wei-Man Lun
    Grace Tin-Yun Chung
    Chit Chow
    Carman Lo
    Kwong-Wai Choy
    Kwok-Wai Lo
    BMC Cancer, 16
  • [50] EBV-associated nasopharyngeal carcinomas: from epidemiology to virus-targeting strategies
    Busson, P
    Keryer, C
    Ooka, T
    Corbex, M
    TRENDS IN MICROBIOLOGY, 2004, 12 (08) : 356 - 360