Phylogenomic analyses provide insights into primate evolution

被引：35

作者：

Shao, Yong ^{[1
]}

Zhou, Long ^{[2
,3
]}

Li, Fang ^{[4
,5
]}

Zhao, Lan ^{[6
]}

Zhang, Bao-Lin ^{[1
]}

Shao, Feng ^{[7
]}

Chen, Jia-Wei ^{[8
]}

Chen, Chun-Yan ^{[9
]}

Bi, Xupeng ^{[2
,3
]}

Zhuang, Xiao-Lin ^{[1
,10
]}

Zhu, Hong-Liang ^{[8
]}

Hu, Jiang ^{[11
]}

Sun, Zongyi ^{[11
]}

Li, Xin ^{[11
]}

Wang, Depeng ^{[11
]}

Rivas-Gonzalez, Iker ^{[12
]}

Wang, Sheng ^{[1
]}

Wang, Yun-Mei ^{[1
]}

Chen, Wu ^{[13
,14
]}

Li, Gang ^{[15
]}

Lu, Hui-Meng ^{[16
]}

Liu, Yang ^{[15
]}

Kuderna, Lukas F. K. ^{[17
,18
]}

Farh, Kyle Kai-How ^{[18
]}

Fan, Peng-Fei ^{[19
]}

Yu, Li ^{[20
]}

Li, Ming ^{[21
]}

Liu, Zhi-Jin ^{[22
]}

Tiley, George P. ^{[23
]}

Yoder, Anne D. ^{[23
]}

Roos, Christian ^{[24
]}

Hayakawa, Takashi ^{[25
,26
]}

Marques-Bonet, Tomas ^{[17
,27
,36
,37
]}

Rogers, Jeffrey ^{[28
]}

Stenson, Peter D. ^{[29
]}

Cooper, David N. ^{[29
]}

Schierup, Mikkel Heide ^{[12
]}

Yao, Yong-Gang ^{[10
,30
,31
,32
,33
]}

Zhang, Ya-Ping ^{[31
,32
,33
]}

Wang, Wen ^{[31
]}

Qi, Xiao-Guang ^{[6
]}

Zhang, Guojie ^{[1
,2
,3
,4
,34
]}

Wu, Dong-Dong ^{[1
,31
,32
,33
,35
]}

机构：

[1] Chinese Acad Sci, Kunming Inst Zool, State Key Lab Genet Resources & Evolut, Kunming Nat Hist Museum Zool, Kunming 650201, Peoples R China

[2] Zhejiang Univ, Ctr Evolutionary & Organismal Biol, Sch Med, Hangzhou 310058, Peoples R China

[3] Zhejiang Univ, Sch Med, Womens Hosp, Hangzhou 310058, Peoples R China

[4] Univ Copenhagen, Dept Biol, Sect Ecol & Evolut, DK-2100 Copenhagen, Denmark

[5] ZhejiangWanli Univ, Inst Anim Sex & Dev, Ningbo 315100, Peoples R China

[6] Northwest Univ, Coll Life Sci, Shaanxi Key Lab Anim Conservat, Xian 710069, Peoples R China

[7] Southwest Univ, Key Lab Freshwater Fish Reprod & Dev, Minist Educ, Sch Life Sci, Chongqing 400715, Peoples R China

[8] BGI Shenzhen, Shenzhen 518083, Peoples R China

[9] Northwestern Polytech Univ, Sch Ecol & Environm, Xian 710072, Peoples R China

[10] Univ Chinese Acad Sci, Kunming Coll Life Sci, Kunming 650204, Peoples R China

[11] Grandom Biosci, Beijing 102206, Peoples R China

[12] Aarhus Univ, Bioinformat Res Ctr, DK-8000 Aarhus, Denmark

[13] Guangzhou Zoo, Guangzhou 510070, Peoples R China

[14] Guangzhou Wildlife Res Ctr, Guangzhou 510070, Peoples R China

[15] Shaanxi Normal Univ, Coll Life Sci, Xian 710119, Peoples R China

[16] Northwestern Polytech Univ, Sch Life Sci, Xian 710072, Peoples R China

[17] PRBB, Inst Evolutionary Biol UPF CSIC, Barcelona 08003, Spain

[18] Illumina Inc, Illumina Artificial Intelligence Lab, San Diego, CA 92122 USA

[19] Sun Yat Sen Univ, Sch Life Sci, Guangzhou 510275, Guangdong, Peoples R China

[20] Yunnan Univ, Sch Life Sci, State Key Lab Conservat & Utilizat Bioresource Yu, Kunming 650091, Peoples R China

[21] Chinese Acad Sci, Inst Zool, CAS Key Lab Anim Ecol & Conservat Biol, Beijing 100101, Peoples R China

[22] Capital Normal Univ, Coll Life Sci, Beijing 100048, Peoples R China

[23] Duke Univ, Dept Biol, Durham, NC 27708 USA

[24] Leibniz Inst Primate Res, German Primate Ctr, Gene Bank Primates & Primate Genet Lab, D-37077 Gottingen, Germany

[25] Hokkaido Univ, Fac Environm Earth Sci, Sapporo, Hokkaido 0600810, Japan

[26] Japan Monkey Ctr, Inuyama, Aichi 4840081, Japan

[27] Catalan Inst Res & Adv Studies ICREA, Passeig Lluis Companys 23, Barcelona 08010, Spain

[28] Baylor Coll Med, Human Genome Sequencing Ctr, Dept Mol & Human Genet, Houston, TX 77030 USA

[29] Cardiff Univ, Inst Med Genet, Sch Med, Cardiff CF14 4XN, Wales

[30] Chinese Acad Sci, Kunming Inst Zool, Key Lab Anim Models & Human Dis Mech Chinese Acad, Kunming 650201, Peoples R China

[31] Chinese Acad Sci, Ctr Excellence Anim Evolut & Genet, Kunming 650201, Peoples R China

[32] Chinese Acad Sci, Kunming Inst Zool, Natl Resource Ctr Nonhuman Primates, Kunming Primate Res Ctr, Kunming 650107, Peoples R China

[33] Chinese Acad Sci, Kunming Inst Zool, Natl Res Facil Phenotyp & Genet Anal Model Anim, Primate Facil, Kunming 650107, Peoples R China

[34] Zhejiang Univ, Med Ctr, Liangzhu Lab, Hangzhou 311121, Peoples R China

[35] Chinese Acad Sci, Kunming Inst Zool, KIZ CUHK Joint Lab Bioresources & Mol Res Common, Kunming 650204, Peoples R China

[36] Barcelona Inst Sci & Technol BIST, Ctr Genom Regulat CRG, CNAG CRG, Barcelona 08028, Spain

[37] Univ Autonoma Barcelona, Inst Catala Paleontol Miquel Crusafont, Edifici ICTA ICP,C Columnes S-N, Barcelona 08193, Spain

来源：

SCIENCE | 2023年 / 380卷 / 6648期

基金：

日本学术振兴会; 欧洲研究理事会; 中国国家自然科学基金;

关键词：

DISCS LARGE 5; ORGAN SIZE; MOLECULAR CLOCK; MESSENGER-RNA; AXON GUIDANCE; CITRON KINASE; BRAIN-SIZE; GENOME; EXPRESSION; MECHANISMS;

D O I：

10.1126/science.abn6919

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

Comparative analysis of primate genomes within a phylogenetic context is essential for understanding the evolution of human genetic architecture and primate diversity. We present such a study of 50 primate species spanning 38 genera and 14 families, including 27 genomes first reported here, with many from previously less well represented groups, the New World monkeys and the Strepsirrhini. Our analyses reveal heterogeneous rates of genomic rearrangement and gene evolution across primate lineages. Thousands of genes under positive selection in different lineages play roles in the nervous, skeletal, and digestive systems and may have contributed to primate innovations and adaptations. Our study reveals that many key genomic innovations occurred in the Simiiformes ancestral node and may have had an impact on the adaptive radiation of the Simiiformes and human evolution.

引用

页码：913 / 924

页数：12

共 50 条

[31] The nearly complete assembly of the Cercis chinensis genome and Fabaceae phylogenomic studies provide insights into new gene evolution
Li, Jinglong
Shen, Jingting
Wang, Rui
Chen, Yamao
Zhang, Taikui
Wang, Haifeng
Guo, Chunce
Qi, Ji
PLANT COMMUNICATIONS, 2023, 4 (01)
[32] Phylogenomic data analyses provide evidence that Xenarthra and Afrotheria are sister groups
Hallstroem, Bjoern M.
Kullberg, Morgan
Nilsson, Maria A.
Janke, Axel
MOLECULAR BIOLOGY AND EVOLUTION, 2007, 24 (09) : 2059 - 2068
[33] New phylogenomic and comparative analyses provide corroborating evidence that Myxozoa is Cnidaria
Feng, Jin-Mei
Xiong, Jie
Zhang, Jin-Yong
Yang, Ya-Lin
Yao, Bin
Zhou, Zhi-Gang
Miao, Wei
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2014, 81 : 10 - 18
[34] Plastome evolution and phylogenomic insights into the evolution of Lysimachia (Primulaceae: Myrsinoideae)
Tong-Jian Liu
Shu-Yan Zhang
Lei Wei
Wei Lin
Hai-Fei Yan
Gang Hao
Xue-Jun Ge
BMC Plant Biology, 23
[35] Plastome evolution and phylogenomic insights into the evolution of Lysimachia (Primulaceae: Myrsinoideae)
Liu, Tong-Jian
Zhang, Shu-Yan
Wei, Lei
Lin, Wei
Yan, Hai-Fei
Hao, Gang
Ge, Xue-Jun
BMC PLANT BIOLOGY, 2023, 23 (01)
[36] Phylogenomic analyses unraveled the evolution of viral tolerance in bats
Xie, Yulong
Zhang, Guojie
CELL GENOMICS, 2024, 4 (02):
[37] Phylogenomic analyses of malaria parasites and evolution of their exported proteins
Pick, Christian
Ebersberger, Ingo
Spielmann, Tobias
Bruchhaus, Iris
Burmester, Thorsten
BMC EVOLUTIONARY BIOLOGY, 2011, 11
[38] Phylogenomic analyses of malaria parasites and evolution of their exported proteins
Christian Pick
Ingo Ebersberger
Tobias Spielmann
Iris Bruchhaus
Thorsten Burmester
BMC Evolutionary Biology, 11
[39] Plastid phylogenomic insights into relationships, divergence, and evolution of Apiales
Deng-Feng Xie
Chuan Xie
Ting Ren
Bo-Ni Song
Song-Dong Zhou
Xing-Jin He
Planta, 2022, 256
[40] Phylogenetic analyses provide the first insights into the evolution of OVATE family proteins in land plants
Liu, Di
Sun, Wei
Yuan, Yaowu
Zhang, Ning
Hayward, Alice
Liu, Yongliang
Wang, Ying
ANNALS OF BOTANY, 2014, 113 (07) : 1219 - 1233

← 1 2 3 4 5 →